Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,096,863 – 8,096,980 |
Length | 117 |
Max. P | 0.528464 |
Location | 8,096,863 – 8,096,980 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.58 |
Mean single sequence MFE | -44.35 |
Consensus MFE | -32.59 |
Energy contribution | -35.15 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.73 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8096863 117 + 27905053 GGAGGCUUUGGUUAUGGACGUCCCUUCUAUGGAGGCUAUGGCCGUCCCUUCUAUGG-AGGUUUCG--GAAGACCCUUCUACGGAGGCGGCUUCGGAGGUCCUUUCUUUGGUUAAAUCUAC (((.(((..((....((((.(((((((((((((((..((....))..)))))))))-))).....--((((.((((((....)))).))))))))).))))...))..)))....))).. ( -43.60) >DroSec_CAF1 48536 117 + 1 GGAGGCUUUGGUUAUGGACGACCCUUCUAUGGUGGCUACGGCCGUCCCUUCUAUGG-AGGUUACG--GAAGACCCUUCUAUGGCGGCGGCUUCGGAGGUCCUUUCUUUGGUUAAAUCUAC .((((((.(.((((((((.(...(((((..(..(((....)))..)((((.....)-)))....)--))))...).)))))))).).))))))(((...((.......)).....))).. ( -37.00) >DroSim_CAF1 20606 117 + 1 GGAGGCUUCGGUUAUGGACGUCCCUUCUACGGAGGCUACGGCCGUCCCUUCUAUGG-AGGUUACG--GAAGACCCUUCUACGGAGGCGGCUUCGGAGGUCCUUUCUUUGGUUAAAUCUAC (((.(((..((....((((.(((((((((.((((((....))).)))......)))-))).....--((((.((((((....)))).))))))))).))))...))..)))....))).. ( -42.10) >DroEre_CAF1 23600 120 + 1 GGAGGCUUUGGUUAUGGACGUCCCUUCUAUGGCGGCUAUGGUCGACCCUUUUAUGGCGGCUUUGGAGGAAGGCCCUUCUACGGAGGCGGCUUCGGAGGUCCUUUCUAUGGCUAAAUCUCC (((((.(((((((((((((.(((((((((.(((.(((((((.........))))))).))).)))))).(((((((((....)))).))))).))).)))).....)))))))))))))) ( -54.70) >consensus GGAGGCUUUGGUUAUGGACGUCCCUUCUAUGGAGGCUACGGCCGUCCCUUCUAUGG_AGGUUACG__GAAGACCCUUCUACGGAGGCGGCUUCGGAGGUCCUUUCUUUGGUUAAAUCUAC ...((((..((....((((.(((((.(((((((((..((....))..))))))))).))........((((.((((((....)))).))))))))).))))...))..))))........ (-32.59 = -35.15 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:47 2006