Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,095,643 – 8,095,760 |
Length | 117 |
Max. P | 0.585363 |
Location | 8,095,643 – 8,095,760 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.20 |
Mean single sequence MFE | -35.18 |
Consensus MFE | -27.68 |
Energy contribution | -27.56 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.53 |
Structure conservation index | 0.79 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8095643 117 + 27905053 AAAUCGAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGAAACGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCCCUUGGCAGACA---AACUGAUUUAUGGCAAUGCAAA ...((((((((((..((..((..(....(((((((((.((((.(....).))..))...))..(((((....)))))))))))).)..))...))---..))))))).)))......... ( -34.30) >DroSec_CAF1 47322 116 + 1 AAAUCAAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGA-ACGAUACUGAUACCGAGUAGAUCGAUCGACGCUUCCCCUUGGCAGACA---AACUGAUUUAUGGCAAUGCAAA ...((((((((((..((..((..(....((((((((..(....)((-.((((.(((........))))))).))..)))))))).)..))...))---..))))))).)))......... ( -30.90) >DroSim_CAF1 19378 116 + 1 AAAUCGAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGA-ACGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCCCUUGGCAGACA---AACUGAUUUAUGGCAAUGCAAA ...((((((((((..((..((..(....(((((((......(((..-............))).(((((....)))))))))))).)..))...))---..))))))).)))......... ( -32.34) >DroEre_CAF1 22375 119 + 1 AAAUCGAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGAGA-GUGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCCCUUGGCAGUCCCCCCACUGAUUUAUGGCAAUGCAAA ...((((((((((...(((((((..(..(((((((((...((.(((-....).)).)).))..(((((....))))))))))))..)..)))))))....))))))).)))......... ( -39.40) >DroYak_CAF1 15880 111 + 1 -----GAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGA-AUGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCUCUUGGCAGUCC---CACUGAUUUAUGGCAAUGCAAA -----.(((((((..((((((((..(..(((((((......(((..-............))).(((((....))))))))))))..)..))))))---)))))))))............. ( -38.94) >consensus AAAUCGAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGA_ACGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCCCUUGGCAGACA___AACUGAUUUAUGGCAAUGCAAA ......(((((((......((((..(..(((((((((...((.((........)).)).))..(((((....))))))))))))..)..))).)......)))))))............. (-27.68 = -27.56 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:45 2006