Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,095,244 – 8,095,350 |
Length | 106 |
Max. P | 0.698064 |
Location | 8,095,244 – 8,095,350 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.37 |
Mean single sequence MFE | -36.40 |
Consensus MFE | -23.60 |
Energy contribution | -23.80 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.52 |
Structure conservation index | 0.65 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.698064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8095244 106 + 27905053 UACAGAU--GCAGCUUCGGUCUGAGAUCGAAUUGAAGA------------UGCAGAUGCAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA ....(((--((.(((((((((....(((.(((((((..------------(((....)))..)))))))...))).((((((((....)))))))).....)))))))))...)).))). ( -39.30) >DroSec_CAF1 46936 106 + 1 UACAGAU--GCAGCAUCGGUCUGAGAUCGAAUUGAAGA------------UGCAGAUGCAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA ......(--(((((.((((((...))))))..((((..------------(((....)))..))))))))))....((((((((....)))))))).....(((((........))))). ( -37.40) >DroSim_CAF1 18972 106 + 1 UACAGAU--GCAGCAGCGGUCUGAGAUCGAAUUGAAGA------------UGCAGAUGCAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA ..(((((--((....)).))))).((((.(((((((..------------(((....)))..)))))))((......(((((((....)))))))((((.(.......))))))))))). ( -37.70) >DroEre_CAF1 21958 112 + 1 UGCAGA--------UUUGGUCUCAGACCGAAGUGAAGAUGCCGAUGGAGAUGCAGAUGGAGAUGCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA .((...--------(((((((...)))))))........((((.....(((((...(((...(((....)))....((((((((....))))))))))))).)))....))))))..... ( -33.70) >DroYak_CAF1 15502 108 + 1 UGCAGAUUUACAGAUUUAGUCUGAGAUCGAACUGAAGA------------UGCAGAUGGAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCAAUCA (((.(((((.(((((...)))))))))).(((((((..------------(.(....).)..))))))))))(((.((((((((....))))))))...(((.((.....))))).))). ( -33.90) >consensus UACAGAU__GCAGCUUCGGUCUGAGAUCGAAUUGAAGA____________UGCAGAUGCAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA ...............((((((...(((((.....................(((((.((......)).)))))....((((((((....))))))))....))))).....))).)))... (-23.60 = -23.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:44 2006