Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,094,943 – 8,095,054 |
Length | 111 |
Max. P | 0.686376 |
Location | 8,094,943 – 8,095,054 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 87.80 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -21.12 |
Energy contribution | -22.74 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.16 |
Mean z-score | -2.26 |
Structure conservation index | 0.65 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8094943 111 - 27905053 AGUCUGCCAAAUGGCAGUGAGCUGCAGUUUAGGGUUGGGUUU--GGAGCUGGAAAGCAAGGCAAGUCUCAAUUAGGACCAAUCUGAACCCUAUAAUUAAUUUACAUAUAAUUG ((((((((....)))))...)))..(((((((((((.((.((--((.(((....)))........(((......))))))).)).))))))).))))................ ( -30.80) >DroSec_CAF1 46643 101 - 1 AGUUUGCCAAAUGGCAGUGAGUUGCAGUUUAGGGUUGGGUUU--G----------GCAAGGCAAGUCUCAAUUAGGCCCAACCUGAACUCCAUAAUUAAUUUACAUAUAAUUG ....((((....))))((((((((.((((((((.((((((((--(----------(..(((....)))...)))))))))))))))))).))......))))))......... ( -31.30) >DroSim_CAF1 18667 113 - 1 AGUUUGCCAAAUGGCAGUGAGUUGCAGUUUAGGGUUGGGUCUUUGGAGCUGGAACGCAAGGCAAGUCUCAAUUAGGCCCAACCUGAACUCCAUAAUUAAUUUACAUAUAAUUG ....((((....))))((((((((.((((((((.(((((((((((..(((....(....)...)))..)))..)))))))))))))))).))......))))))......... ( -39.80) >DroEre_CAF1 21657 111 - 1 AGUUUGCCAAAUGGCAGUGAGCUGCAGUUUAGGGCUGGGCUU--GAAGCUGAAUGGUAAGGUAAGUCUCAAUUAGGGCCAACCUGAACCCCAUAAUUAAUUUACAUAUAAUUG ..(((((((..((((..((((((.((((.....)))))))))--)..))))..)))))))((((((...((((((((...........))).))))).))))))......... ( -27.70) >consensus AGUUUGCCAAAUGGCAGUGAGCUGCAGUUUAGGGUUGGGUUU__GGAGCUGGAA_GCAAGGCAAGUCUCAAUUAGGCCCAACCUGAACCCCAUAAUUAAUUUACAUAUAAUUG ....((((....))))((((((((.((((((((.((((((((..((..((.............))..))....)))))))))))))))).))......))))))......... (-21.12 = -22.74 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:43 2006