Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,094,726 – 8,094,829 |
Length | 103 |
Max. P | 0.835911 |
Location | 8,094,726 – 8,094,829 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 94.35 |
Mean single sequence MFE | -29.02 |
Consensus MFE | -25.88 |
Energy contribution | -25.92 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.36 |
Structure conservation index | 0.89 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8094726 103 + 27905053 UCCACCUGUCAGCCAAAUGGACAGCAAUCCGAACACACAAUUAUCUGCCAAAUGACGAGGGCGUGUCAGGUGGCGCUUACCAUUUUGGUUCGACUAUAUAUGU .......(((((((((((((..(((.....(......)........((((..(((((......)))))..)))))))..))).))))))).)))......... ( -28.20) >DroSec_CAF1 46436 101 + 1 UCCACCUGUCAGCCAAAUGGACAGCAAUCCGAACACACAAUUAUCUGCCAAAUGACGAGGGCGUGUCAGGUGGCGCUUACCAUUUUGGUUCGGCCAUAUAU-- .(((((((.(((((...((((......)))).........(..((........))..).))).)).))))))).(((.(((.....)))..))).......-- ( -27.70) >DroSim_CAF1 18457 100 + 1 UCCACCUGUCAGCCAAAUGGACAGCAAUCCGAACACACAAUUAUCUGGCAAAUGACGAGGGCGUGUCAGGUGGCGCUUACCAUUUUGGUUCGGCCAUAUA--- .(((((((.(((((...((((......)))).............((.((....).).))))).)).))))))).(((.(((.....)))..)))......--- ( -28.30) >DroEre_CAF1 21443 102 + 1 UCCACCUGUCAGCCAAAUGGACAGCAAUCCGAACACACAAUUAUCUGCCAAAUGACGAGGGCGUGUCAGGUGGCGCUUACCAUUUUGGUU-GGCUAUACUUGU .......(((((((((((((..(((.....(......)........((((..(((((......)))))..)))))))..))).)))))))-)))......... ( -31.40) >DroYak_CAF1 14975 100 + 1 UCCACCUGUCAGCCAAAUGGACAGCAAUCCGAACACACAAUUAUCUGCCAAAUGACGAGGGCGUGUCAGGUGGCGCUUACCAUUUUGGUU-AGCUAUA--UAC .(((((((.(((((...((((......)))).........(..((........))..).))).)).))))))).(((.(((.....))).-)))....--... ( -29.50) >consensus UCCACCUGUCAGCCAAAUGGACAGCAAUCCGAACACACAAUUAUCUGCCAAAUGACGAGGGCGUGUCAGGUGGCGCUUACCAUUUUGGUUCGGCUAUAUAU__ .(((((((.(((((...((((......)))).........(..((........))..).))).)).))))))).(((.(((.....)))..)))......... (-25.88 = -25.92 + 0.04)
Location | 8,094,726 – 8,094,829 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 94.35 |
Mean single sequence MFE | -30.66 |
Consensus MFE | -28.56 |
Energy contribution | -28.40 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.14 |
Structure conservation index | 0.93 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8094726 103 - 27905053 ACAUAUAUAGUCGAACCAAAAUGGUAAGCGCCACCUGACACGCCCUCGUCAUUUGGCAGAUAAUUGUGUGUUCGGAUUGCUGUCCAUUUGGCUGACAGGUGGA (((((((..(((..(((.....)))....((((..((((........))))..)))).)))...)))))))...........((((((((.....)))))))) ( -29.10) >DroSec_CAF1 46436 101 - 1 --AUAUAUGGCCGAACCAAAAUGGUAAGCGCCACCUGACACGCCCUCGUCAUUUGGCAGAUAAUUGUGUGUUCGGAUUGCUGUCCAUUUGGCUGACAGGUGGA --.....(((((..(((.....)))..).))))((.(((((((..(((((....))).)).....))))))).)).......((((((((.....)))))))) ( -30.50) >DroSim_CAF1 18457 100 - 1 ---UAUAUGGCCGAACCAAAAUGGUAAGCGCCACCUGACACGCCCUCGUCAUUUGCCAGAUAAUUGUGUGUUCGGAUUGCUGUCCAUUUGGCUGACAGGUGGA ---....(((((..(((.....)))..).))))((.(((((((....(((........)))....))))))).)).......((((((((.....)))))))) ( -30.40) >DroEre_CAF1 21443 102 - 1 ACAAGUAUAGCC-AACCAAAAUGGUAAGCGCCACCUGACACGCCCUCGUCAUUUGGCAGAUAAUUGUGUGUUCGGAUUGCUGUCCAUUUGGCUGACAGGUGGA .........((.-.(((.....)))..)).(((((((.((.(((...(((....)))................((((....))))....))))).))))))). ( -30.50) >DroYak_CAF1 14975 100 - 1 GUA--UAUAGCU-AACCAAAAUGGUAAGCGCCACCUGACACGCCCUCGUCAUUUGGCAGAUAAUUGUGUGUUCGGAUUGCUGUCCAUUUGGCUGACAGGUGGA ...--....(((-.(((.....))).))).(((((((.((.(((...(((....)))................((((....))))....))))).))))))). ( -32.80) >consensus __AUAUAUAGCCGAACCAAAAUGGUAAGCGCCACCUGACACGCCCUCGUCAUUUGGCAGAUAAUUGUGUGUUCGGAUUGCUGUCCAUUUGGCUGACAGGUGGA .........((...(((.....)))..)).(((((((((((((....(((........)))....))))))..((((....))))..........))))))). (-28.56 = -28.40 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:42 2006