Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,094,584 – 8,094,704 |
Length | 120 |
Max. P | 0.638114 |
Location | 8,094,584 – 8,094,704 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.82 |
Mean single sequence MFE | -35.60 |
Consensus MFE | -30.06 |
Energy contribution | -29.42 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.10 |
Mean z-score | -1.42 |
Structure conservation index | 0.84 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638114 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8094584 120 + 27905053 UUAAAUCAUAUUGGAUGUCAGUCAAAUCGCUGGUGACAUUCCCAAAUUAGAAGAAGUCGGUGGGGCGGCAACUUUAUUGCGUGGUGAUUGCCACGGCCAUUGUUUCGAUGACACGCCAAA ............((((((((.(((......))))))))))).................((((.((((....).......((((((....)))))))))..((((.....))))))))... ( -32.60) >DroSec_CAF1 46294 120 + 1 UUAAAUCAUAUUGGACGUCAGUCAAAUCCCUGGUGACAUUCCCAAAUUAGAAGAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUUGAUGACACGCCAAA ..........((((.(((..((((((.(((((.((((.(((........)))...)))).))))).(((..(......)((((((....))))))))).....))))))...))))))). ( -36.00) >DroSim_CAF1 18315 120 + 1 UUAAAUCAUAUUGGACGUCAGUCAAAUCGCUGGUGACAUUCCCAAAUUAGAAGAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUCGAUGACACGCCAAA ..........((((.(((..((((..((..((....))..............((((.((((((((.(....).))....((((((....)))))).))))))))))))))))))))))). ( -33.20) >DroEre_CAF1 21304 117 + 1 UUAAAUCAUAUUGGACGUCAGUCAAAGC---AGUGACAUUCCCAAAUUAGAAAAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUUGAUGACACGCCAAA ..........((((.(((..((((((((---((((.....((((.....((.....))..))))(((....).......((((((....))))))))))))))))))))...))))))). ( -38.50) >DroYak_CAF1 14836 117 + 1 UUAAAUCAUAUUGGACGUCAGUCAAAGC---GGUGACAUUCCCAAAUUAGAAAAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUUGAUGACACGCCAAA ..........((((.(((..((((((((---((((.....((((.....((.....))..))))(((....).......((((((....))))))))))))))))))))...))))))). ( -37.70) >consensus UUAAAUCAUAUUGGACGUCAGUCAAAUC_CUGGUGACAUUCCCAAAUUAGAAGAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUUGAUGACACGCCAAA ..........((((..((((((((.........))))...............((((.((((((((.(....).))....((((((....)))))).))))))))))..))))...)))). (-30.06 = -29.42 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:41 2006