Locus 3052

Sequence ID 3R_DroMel_CAF1
Location 8,094,004 – 8,094,123
Length 119
Max. P 0.714429
window4941

overview

Window 1

Location 8,094,004 – 8,094,123
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.90
Mean single sequence MFE -19.12
Consensus MFE -16.92
Energy contribution -16.84
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.29
Structure conservation index 0.88
SVM decision value 0.38
SVM RNA-class probability 0.714429
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8094004 119 + 27905053
CGGGCAGGCCUAGAAA-AAAAUAACACUUAAAAAAUUUGCAAACAUGUUUUGCAUACAGCAAAACCGAUCAUCAAAUAUUCACAUGCAACCGACGGGAAUCUUAGGUAAAUUUUCACCCA
.(((...(((((((..-...................(((((.....(((((((.....))))))).((...........))...)))))((....))..)).))))).........))). ( -20.80)
>DroSec_CAF1 45716 120 + 1
CGGGCACGCCUGGAAAAAAAAUAACACUUAACAAAUUUGCAAACAUGUUUUGCAUACAGCAAAACCGAUCAUCAAAUAUUCACAUGCAACCAACGGAAAUCUUAGGUAAAUUUUCACCCA
((((....))))(((((....................((((.....(((((((.....))))))).((...........))...))))(((...((....))..)))...)))))..... ( -19.40)
>DroSim_CAF1 17737 120 + 1
CGGGCAGGCCUGCAAAAAAAAUAACACUUAAAAAAUUUGCAAACAUGUUUUGCAUACAGAAAAACCGAUCAUCAAAUAUUCACAUGCAACCAACGGGAAUCUUAGGUAAAUUUUCACCCA
.(((..((..((((.......................((((((.....))))))....((........))..............)))).))...(..(((.........)))..).))). ( -15.80)
>DroEre_CAF1 20732 119 + 1
CGGGCAGGCCUAGAAA-AAAGUAACACUUAAAAAAUUUGCAAACAUGUUUUGCAUGCAGCAAAACCGAUCAUCAAAUAUUCACAUGCAAUCAACGGAAAUCUUAGGUAAAUUUUCACCCA
.(((...(((((((..-.(((.....))).......(((((.....(((((((.....))))))).((...........))...)))))..........)).))))).........))). ( -19.80)
>DroYak_CAF1 14229 119 + 1
CGGGCAGGCCUAAAAA-AAAGUAGCACUUAAAAAAUUUGCAAACAUGUUUUGCAUACAGCAAAACCGAUCAUCAAAUAUUCACAUGCAAUCAACGGAAAUCUUAGGUAAAUUUUCACCCA
.(((...((((((...-.(((.....))).......(((((.....(((((((.....))))))).((...........))...)))))............)))))).........))). ( -19.80)
>consensus
CGGGCAGGCCUAGAAA_AAAAUAACACUUAAAAAAUUUGCAAACAUGUUUUGCAUACAGCAAAACCGAUCAUCAAAUAUUCACAUGCAACCAACGGAAAUCUUAGGUAAAUUUUCACCCA
.(((...((((((.......................(((((.....(((((((.....))))))).((...........))...)))))((....))....)))))).........))). (-16.92 = -16.84 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:39 2006