Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,091,823 – 8,091,941 |
Length | 118 |
Max. P | 0.664033 |
Location | 8,091,823 – 8,091,941 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -17.26 |
Energy contribution | -17.30 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.11 |
Mean z-score | -1.52 |
Structure conservation index | 0.77 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8091823 118 + 27905053 CUGUGGUUAAUACAGAAUAUAACAAAAGCUGAGCACUAAACA--AGCAGUAAGUGCAGUAAAAUUCUGAAUGAAUUGGGUUCAAUCAAUUUGAAACGCCCACAUUGUUAUUGGCACAAAU .((((.((((((((((((....((.....)).(((((..((.--....)).)))))......))))))((((...(((((((((.....))))...)))))))))..))))))))))... ( -25.40) >DroSec_CAF1 43588 112 + 1 CUGUGGUUAAUAUA-------ACCAAAGCUGAGCACUAAACACAA-CAAUAAGUGUAGUAAAAUUCUGAAUGAAUUGGGUUCAAUCAAUUUGAAACACCCACAUUGUUAUUGGCACAAAU ...((((((...))-------))))..(((.((((....((((..-......)))).((..(((((.....)))))((((((((.....))))...))))))..))))...)))...... ( -21.60) >DroSim_CAF1 15620 114 + 1 CUGUGGUUAAUACAG------AACAUAGCUGAGCACUAAACACAAGCAAUAAGUGUAGUAAAAUUCUGAAUGAAUUGGGUUCAAUCAAUUUGAAACACCCACAUUGUUAUUGGCACAAAU .((((.(((((((((------((....(((..(((((..............))))))))....)))))((((...(((((((((.....))))...)))))))))..))))))))))... ( -23.24) >DroEre_CAF1 18643 94 + 1 CUGUGGUUAAUACAGAACUUUACUAG--------------------------GUGCAGUAAAAUUCGGAAUGAAUUGGGUUCAAUCAAUUCGAAACACCCACCUUAUUAUUGGCACAAAU .((((.(((((...(((.((((((..--------------------------....)))))).)))..(((((..(((((....((.....))...)))))..))))))))))))))... ( -18.30) >DroYak_CAF1 12045 120 + 1 CUGCGGUUACUACAGAACAUAACUAAGGCUGAGCACUAAAAACAAGCAAUGAGUGUAGUAAAAUUCAGAAUGAAUUGGGUUCAAUCAAUUUGAAACACCCAACUUAUUAUUGGCACAAAU .(((..(((((((........(((...(((..............)))....))))))))))....((((((((.((((((((((.....))))...)))))).))))).))))))..... ( -23.84) >consensus CUGUGGUUAAUACAGAA__U_ACCAAAGCUGAGCACUAAACACAAGCAAUAAGUGUAGUAAAAUUCUGAAUGAAUUGGGUUCAAUCAAUUUGAAACACCCACAUUGUUAUUGGCACAAAU (((((.....))))).....................................((((((((((((((.....)))))((((((((.....))))...))))......))))).)))).... (-17.26 = -17.30 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:34 2006