Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,091,099 – 8,091,219 |
Length | 120 |
Max. P | 0.975257 |
Location | 8,091,099 – 8,091,219 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -34.32 |
Energy contribution | -35.16 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.03 |
Mean z-score | -1.69 |
Structure conservation index | 0.94 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8091099 120 + 27905053 UUUCCUGUGGCAACAUCAACUUCCUGUUGUGGCAUGGAAAUCUCCUAGUCAGCGUUUCACACGCCGUCUGACAACUGCAGCCGCUUUGAAGUUGCAUGCAGCGCAUUUUCCGCUGUGUGU ......(((....)))(((((((.....(((((..(((....)))..(((((((..........)).))))).......)))))...)))))))(((((((((.......))))))))). ( -39.30) >DroSec_CAF1 42871 120 + 1 UUUCCUGUGGCAACAUCAACUUCCUGUUGUGGCAUGGAAAUCUUCUAGUCAGCGUUUCACACGCCGUCUGACAACUGCAACCGCUUUGAAGUCGCAUUCAGCGCAUUUUCCGCUGUGUGU ((((((((.((((((.........)))))).))).))))).((((..(((((((..........)).)))))....((....))...))))..((((.(((((.......))))).)))) ( -34.50) >DroSim_CAF1 14876 120 + 1 UUUCCUGUGGCAACAUCAACUUCCUGUUGUGGCAUGGAAAUCUCCUAGUCAGCGUUUCACACGCCGUCUGACAACUGCAGCCGCUUUGAAGUUGCAUGCAGCGCAUUUUCCGCUGUGUGU ......(((....)))(((((((.....(((((..(((....)))..(((((((..........)).))))).......)))))...)))))))(((((((((.......))))))))). ( -39.30) >DroEre_CAF1 17913 120 + 1 UUUCCUGUGGCAACAUCAACUUCCUGUUUUGGCAUGGAAAUCUCCUAGUCAGCGUUUCACACGCCGCCUGACAACUGCAGCCGCUUUGAAGUUGCAUGCAGCGCAUUUUCCGCUGUGUGU ......(((....)))(((((((..((...(((..(((....)))..(((((((..........)).))))).......)))))...)))))))(((((((((.......))))))))). ( -35.20) >DroYak_CAF1 11262 120 + 1 UUUCCUGUGGCAACAUCAACUUCCUGUUUUGGCAUGGAAAUCUCCUAGUCAGCGUUUCACACGCCGCCUGACAACUGCAGCCGCUUUGAAGUUGCAUGCAGCGCAUUUUCCGCUGUGUGU ......(((....)))(((((((..((...(((..(((....)))..(((((((..........)).))))).......)))))...)))))))(((((((((.......))))))))). ( -35.20) >consensus UUUCCUGUGGCAACAUCAACUUCCUGUUGUGGCAUGGAAAUCUCCUAGUCAGCGUUUCACACGCCGUCUGACAACUGCAGCCGCUUUGAAGUUGCAUGCAGCGCAUUUUCCGCUGUGUGU ......(((....)))(((((((.....(((((..(((....)))..(((((((..........)).))))).......)))))...)))))))(((((((((.......))))))))). (-34.32 = -35.16 + 0.84)
Location | 8,091,099 – 8,091,219 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -36.52 |
Consensus MFE | -33.64 |
Energy contribution | -33.48 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.38 |
Structure conservation index | 0.92 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8091099 120 - 27905053 ACACACAGCGGAAAAUGCGCUGCAUGCAACUUCAAAGCGGCUGCAGUUGUCAGACGGCGUGUGAAACGCUGACUAGGAGAUUUCCAUGCCACAACAGGAAGUUGAUGUUGCCACAGGAAA .....(((((....((((((((..(((((((.((.......)).))))).))..))))))))....))))).........(((((.((...(((((.........)))))...))))))) ( -35.40) >DroSec_CAF1 42871 120 - 1 ACACACAGCGGAAAAUGCGCUGAAUGCGACUUCAAAGCGGUUGCAGUUGUCAGACGGCGUGUGAAACGCUGACUAGAAGAUUUCCAUGCCACAACAGGAAGUUGAUGUUGCCACAGGAAA .....(((((....((((((((..(((((((.(((.....))).))))).))..))))))))....))))).........(((((.((...(((((.........)))))...))))))) ( -35.80) >DroSim_CAF1 14876 120 - 1 ACACACAGCGGAAAAUGCGCUGCAUGCAACUUCAAAGCGGCUGCAGUUGUCAGACGGCGUGUGAAACGCUGACUAGGAGAUUUCCAUGCCACAACAGGAAGUUGAUGUUGCCACAGGAAA .....(((((....((((((((..(((((((.((.......)).))))).))..))))))))....))))).........(((((.((...(((((.........)))))...))))))) ( -35.40) >DroEre_CAF1 17913 120 - 1 ACACACAGCGGAAAAUGCGCUGCAUGCAACUUCAAAGCGGCUGCAGUUGUCAGGCGGCGUGUGAAACGCUGACUAGGAGAUUUCCAUGCCAAAACAGGAAGUUGAUGUUGCCACAGGAAA .....(((((....(((((((((.(((((((.((.......)).))))).)).)))))))))....)))))....((.(((((((.((......))))))))).......))........ ( -38.00) >DroYak_CAF1 11262 120 - 1 ACACACAGCGGAAAAUGCGCUGCAUGCAACUUCAAAGCGGCUGCAGUUGUCAGGCGGCGUGUGAAACGCUGACUAGGAGAUUUCCAUGCCAAAACAGGAAGUUGAUGUUGCCACAGGAAA .....(((((....(((((((((.(((((((.((.......)).))))).)).)))))))))....)))))....((.(((((((.((......))))))))).......))........ ( -38.00) >consensus ACACACAGCGGAAAAUGCGCUGCAUGCAACUUCAAAGCGGCUGCAGUUGUCAGACGGCGUGUGAAACGCUGACUAGGAGAUUUCCAUGCCACAACAGGAAGUUGAUGUUGCCACAGGAAA .....(((((....((((((((..(((((((.((.......)).))))).))..))))))))....))))).......(((((((.((......)))))))))................. (-33.64 = -33.48 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:27 2006