Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,090,587 – 8,090,707 |
Length | 120 |
Max. P | 0.596404 |
Location | 8,090,587 – 8,090,707 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -25.88 |
Consensus MFE | -24.16 |
Energy contribution | -23.72 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.10 |
Structure conservation index | 0.93 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596404 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8090587 120 + 27905053 UUAAGUGCAUCUACAGCAGUGGCACAUAUGUAUGAGACCGCUGCUUCCGCUUUUGAGUCGUAGCCGCCAAAGGACAUGCGCCAAAAUAUGAAAAAACACAAAAAACGAAAUGAAAACCCG ....((((((....(((((((((.(((....))).).))))))))...(((((((.(.((....))))))))).)))))))....................................... ( -26.00) >DroSec_CAF1 42380 116 + 1 UUAAGUGCAUCUACAGCAGUGGUACAUA----UGAGACCGCUGCUUCCGCUUUUGAGUCGUAGCCGCCAAAGGACAUGCGCCAAAAUAUGAAAAAACACAAAAAACGAAAUGAAAGCCAG ..............(((((((((.(...----...))))))))))...(((((((..((((..((......)).((((........))))..............))))..)))))))... ( -26.20) >DroSim_CAF1 14385 116 + 1 UUAUGUGCAUCUACAGCAGUGGUACAUA----UGAGACCGCUGCUUCCGCUUUUGAGUCGUAGCCGGCAAAGGACAUGCGCCAAAAUAUGAAAAAACACAAAAAACGAAAUGAAAACCAG ...((((........((((((((.(...----...)))))))))(((...(((((.(.((((.((......))...))))))))))...)))....)))).................... ( -26.10) >DroEre_CAF1 17356 115 + 1 UUAAAUGCAUCUACAGCAGUGGUACAUA----UGAGACCGCUGCUUCCGCUUUUGAGUCGCAGCCGCCAAAGGACAUGCGCCAAAAUAUGAAAAAACAUAA-AAACGAAAUGAAAACCAG ......((......(((((((((.(...----...))))))))))...))(((((.(.((((.((......))...))))))))))((((......)))).-.................. ( -25.50) >DroYak_CAF1 10751 115 + 1 UCCAGUGCCCCAACAGCAGUGGUACAUA----UGAGACCGCUGCUUCCGCUUUUGAGUCGCAGCCGCCAAAGGACAUGCGCCAAAAUAUGAAAAAACAUAA-AAACGAAAUGAAAACCAG ....((......))(((((((((.(...----...))))))))))..((.(((((.(.((((.((......))...))))))))))((((......)))).-...))............. ( -25.60) >consensus UUAAGUGCAUCUACAGCAGUGGUACAUA____UGAGACCGCUGCUUCCGCUUUUGAGUCGUAGCCGCCAAAGGACAUGCGCCAAAAUAUGAAAAAACACAAAAAACGAAAUGAAAACCAG ....(((........((((((((.((......))..))))))))(((...(((((.(.((((.((......))...))))))))))...)))....)))..................... (-24.16 = -23.72 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:21 2006