Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,089,866 – 8,089,986 |
Length | 120 |
Max. P | 0.941014 |
Location | 8,089,866 – 8,089,986 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.73 |
Mean single sequence MFE | -34.51 |
Consensus MFE | -27.42 |
Energy contribution | -29.66 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.12 |
Structure conservation index | 0.79 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.941014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8089866 120 + 27905053 GCACAUCUAUUGAUCUCGGCCCCAAUGAAUGGAACGAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGGAGGUGUCACAAUUUUUGACACUUCA ..........((((....((((..((((.((((.((.(((((....(((.....))).......)))))..)).)))))))).))))...))))(((((((((.......))))))))). ( -34.40) >DroSec_CAF1 41671 120 + 1 GCACAUCUAUUGAUCUGGGCCCCAAUGAAUGGAAGCAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGUAGGUGUCACAAUUUUUGACACUUCA ((...(((((.((((.((((......(((.(((((((((........))....))).)))))))...)))).))))....)))))))......(.((((((((.......))))))))). ( -32.00) >DroSim_CAF1 13558 120 + 1 GCACAUCUAUUGAACUGGGCUCCAAUGAAUGGAAACAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGUAAGUGUCACAAUUUUUGACACUUCA ((............(.(((((.....(((.((((...((...............)).)))))))..))))).)..((......))))......(.((((((((.......))))))))). ( -27.66) >DroEre_CAF1 16637 117 + 1 GCACA---AUUGAUCUGGGCUCCAUUCAAUGGAACGAGCUAAUCCCCGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUGGGGCACAAUCGGAGGUGUCACAAUUUUUGACACUUCA .....---..((((.((.(((((((...(((((.((.(((((....(((.....))).......)))))..)).))))).))))))).))))))(((((((((.......))))))))). ( -37.70) >DroYak_CAF1 10035 117 + 1 GCACC---AUGGAUCCGGGAUCCAAUGAAUGGAACGAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGGAGGUGUCACAAUUUUUGACACUUCA ((.((---(((((((.(((.......(((.((((((.((........))......)))))))))....))).)))))))....)))).......(((((((((.......))))))))). ( -40.80) >consensus GCACAUCUAUUGAUCUGGGCUCCAAUGAAUGGAACGAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGGAGGUGUCACAAUUUUUGACACUUCA ((......((.((((.(((((.....(((.((((((.((........))......)))))))))..))))).)))).))......)).......(((((((((.......))))))))). (-27.42 = -29.66 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:20 2006