Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,089,403 – 8,089,523 |
Length | 120 |
Max. P | 0.831664 |
Location | 8,089,403 – 8,089,523 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -28.32 |
Energy contribution | -28.00 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.06 |
Mean z-score | -1.29 |
Structure conservation index | 0.98 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8089403 120 - 27905053 GUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGAACAACCCGAGCCAAU (((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))).........((......))........ ( -27.90) >DroSec_CAF1 41230 120 - 1 GUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGAACAACCCGAGCCAAU (((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))).........((......))........ ( -27.90) >DroSim_CAF1 13096 120 - 1 GUGCGAGUGUUAUGUUAUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGAACAACCCGAGCCAAU (((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))).........((......))........ ( -27.90) >DroEre_CAF1 16175 120 - 1 GUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUACAGGAGGAACAGCCCGAGCCAAU (((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....)))......((.((......))...))... ( -30.70) >DroYak_CAF1 9581 120 - 1 GUGCGAGUGUUGUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGCGGAACAGCCCGAGCCAAU (((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....)))........(((......)))....... ( -30.10) >consensus GUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGAACAACCCGAGCCAAU (((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))).........((......))........ (-28.32 = -28.00 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:19 2006