Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,088,831 – 8,088,936 |
Length | 105 |
Max. P | 0.990249 |
Location | 8,088,831 – 8,088,936 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -24.06 |
Energy contribution | -23.74 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.91 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8088831 105 - 27905053 ------------CGAAAAAAGACGAAAUAGAGCUGCAGGUGUCAACAAACCAACUAAGGUGGCCUGGUCAAGUGGAGGCCAUUAAAAGAGCGUUGGGCCAGCAGUUAAAA---AACAAUA ------------..................((((((.(((.(((((..(((......)))(((((..........)))))...........)))))))).))))))....---....... ( -26.90) >DroSec_CAF1 40660 105 - 1 ------------CAAAAAAAGACGAAAUAGAGCUGCAGGUGUCAACAAACCAACUAAGGUGGCCUGGUCAAGUGGAGGCCAUUAAAAGAGCGUUGGGCCAGCAGUUAAAA---AACAAUA ------------..................((((((.(((.(((((..(((......)))(((((..........)))))...........)))))))).))))))....---....... ( -26.90) >DroSim_CAF1 12529 105 - 1 ------------CAAAAAAAGACGAAAUAGAGCUGCAGGUGUCAACAAACCAACUAAGGUGGCCUGGUCAAGUGGAGGCCAUUAAAAGAGCGUUGGGCCAGCAGUUAAAA---AACACUA ------------..................((((((.(((.(((((..(((......)))(((((..........)))))...........)))))))).))))))....---....... ( -26.90) >DroEre_CAF1 15580 117 - 1 GGGUCUAAGACUCGAAA-AAGACGAAAUAGAGCUGCAGGUGUCAAGAAACCAACUAAGGUGGCCUGGUCAAGUGGAGGCCAUCAAAAGAGCGUAGGGCCAGUAGUUAAAA--AAACAAUA (((((...)))))....-............((((((.(((........)))........((((((((((.......)))).((....)).....))))))))))))....--........ ( -28.10) >DroYak_CAF1 9001 117 - 1 ---UCUAAGACCCGAAAAAAUACGAAAUUGAGCUGCAGGUGUCAAGAAACCAACUAAGGUGGCCUGGUCAAGUGGAGGCCAUUAAAAGAGCGUUGGGCCAGCAGUUAAAAAAAAACUAUA ---...........................((((((.(((........)))........(((((((.((.(((((...)))))....)).)...)))))))))))).............. ( -23.90) >consensus ____________CGAAAAAAGACGAAAUAGAGCUGCAGGUGUCAACAAACCAACUAAGGUGGCCUGGUCAAGUGGAGGCCAUUAAAAGAGCGUUGGGCCAGCAGUUAAAA___AACAAUA ..............................((((((.(((........)))........((((((((((.......)))).((....)).....)))))))))))).............. (-24.06 = -23.74 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:17 2006