Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,088,490 – 8,088,591 |
Length | 101 |
Max. P | 0.841560 |
Location | 8,088,490 – 8,088,591 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.59 |
Mean single sequence MFE | -31.96 |
Consensus MFE | -23.64 |
Energy contribution | -24.36 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.17 |
Mean z-score | -1.60 |
Structure conservation index | 0.74 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8088490 101 + 27905053 UCUUUUUGUUCGGUAGCCUCGACAAAGGGGUCAAUUCGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGCGUCCUGAAAUUGGGUGGCCAUUUUGU------------------- (((((((((.(((.....))))))))))))......(((((.(((..((.(..((.(((((((((((.....)))))))))))))..).))))).))))).------------------- ( -37.90) >DroSec_CAF1 13364 118 + 1 UCUUUUUGUUCGAUGGCCUCGACAAAGGGGUCAAUUCAAAAGGGCAACAGUUGAUGGUCAGGGCGCUUGG-UGGNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .......(((((((((((((......))))))...((((...(....)..))))..))).))))......-..............-.................................. ( -18.20) >DroSim_CAF1 12184 100 + 1 UCUUUUUGUUCGAUGGCCUCGACAAAGGGGUCAAUUCGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGAGUCCUGAAAU-GGGUGGCCAUUUUGU------------------- ........((((((((((((......)))))))..)))))..(((.((........((((((((.((.....)).))))))))..-..)).))).......------------------- ( -33.40) >DroEre_CAF1 15198 100 + 1 UCUUUUUGUUCGGUGGCCCCGGCAAAGGGGUCAAUUCGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGAGUCCUGAAAU-GGGUGGCCAUUUUGU------------------- ........((((((((((((......)))))))..)))))..(((.((........((((((((.((.....)).))))))))..-..)).))).......------------------- ( -35.50) >DroYak_CAF1 8552 100 + 1 UCUUUUUGUUCGGUGGCCCCGACAAAGGGGUCAGUUUGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGAGUCCUGACAU-GGGUGGCCAUUUUGU------------------- .(((((.....(.(((((((......))))))).)..)))))(((.((...(.((((.((((((.((.....)).))))))))))-.))).))).......------------------- ( -34.80) >consensus UCUUUUUGUUCGGUGGCCUCGACAAAGGGGUCAAUUCGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGAGUCCUGAAAU_GGGUGGCCAUUUUGU___________________ ((((((((.....(((((((......)))))))...)))))))).............(((((((.((.....)).)))))))...................................... (-23.64 = -24.36 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:17 2006