Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,087,329 – 8,087,446 |
Length | 117 |
Max. P | 0.705141 |
Location | 8,087,329 – 8,087,446 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.75 |
Mean single sequence MFE | -26.86 |
Consensus MFE | -23.50 |
Energy contribution | -23.86 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.31 |
Structure conservation index | 0.88 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8087329 117 - 27905053 UCAAGCCAAAUAAAGGGCAGUCCUUAAACAGCAUUCGACUGUCCCAGAUCGAGAUAGCCCUGUCCGCUGCAGAUAUACAAACAAAUAAAUCAUAUCAGAGGUAAAGGGAUCUCCGA---C ..............((((((((..............))))))))....(((((((..((((..((.(((..(((.((........)).)))....))).))...)))))))).)))---. ( -26.84) >DroSec_CAF1 12246 117 - 1 UCAAGCCAAAUAAAGGGCAGUCCUUAAACAGCAUUCGACUGUCCCAGAUCGAGAUAACCCUGUCCGCUGCAGAUAUACAAACAAAUAAAUCAUAUCAGAGGUAGAGGGAUCUCCGA---C ..............((((((((..............))))))))....(((((((..((((.(((.(((..(((.((........)).)))....))).)).).)))))))).)))---. ( -27.04) >DroSim_CAF1 11082 117 - 1 UCAAGCCAAAUAAAGGGCAGUCCUUAAACAGCAUUCGACUGUCCCAGAUCGAGAUAACCCUGUCCGCUGCAGAUAUACAAACAAAUAAAUCAUAUCAGAGGCAAAGGGAUCUCCGA---C ..............((((((((..............))))))))....(((((((..((((....(((...(((((...............)))))...)))..)))))))).)))---. ( -26.40) >DroEre_CAF1 14026 120 - 1 UCAAGCCAAAGAAAGGGCAGUCCUUAAACAGCAUUCGACUGUCCCAGAUCGAGAUAGCCCCGUCCGCUGCAGAUAUACAAACAAAUAAAUCAUAUCAGAGGUAAAGGGAUCCUCCAUGCC ...(((....((..((((.((......))....((((((((...))).)))))...))))..)).)))((((((((...............))))).((((.........))))..))). ( -23.26) >DroYak_CAF1 7384 117 - 1 UCAAGCCAAAUAAAGGGCAGUCCUUAAACAGCAUUCGACUGUCCCAGAUCGAGAUAGCCCUGUCCGCUGCAGAUAUACAAAUAAAUAAAUCAUAUCAGGGGUAAAGGGAUCCUCGA---G ..............((((((((..............))))))))....(((((....((((..((.(((..(((.((........)).)))....))).))...))))...)))))---. ( -30.74) >consensus UCAAGCCAAAUAAAGGGCAGUCCUUAAACAGCAUUCGACUGUCCCAGAUCGAGAUAGCCCUGUCCGCUGCAGAUAUACAAACAAAUAAAUCAUAUCAGAGGUAAAGGGAUCUCCGA___C ..............((((((((..............))))))))......(((((..((((..((.(((..(((.((........)).)))....))).))...)))))))))....... (-23.50 = -23.86 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:13 2006