Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,084,702 – 8,084,816 |
Length | 114 |
Max. P | 0.819871 |
Location | 8,084,702 – 8,084,816 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.70 |
Mean single sequence MFE | -35.16 |
Consensus MFE | -32.98 |
Energy contribution | -33.42 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.25 |
Structure conservation index | 0.94 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8084702 114 + 27905053 ------CCAGUGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUUGUUUCUACGAGUGCCUGAUAAGCGCCAUUUGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA ------.(((((.(.((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))..)))).).).))))..(((((....))))). ( -35.00) >DroSec_CAF1 9628 114 + 1 ------CCAGUGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUCGUUUCUACGAGUGCCUGAUAAGCGCCAUUUGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA ------.(((((.(.((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))..)))).).).))))..(((((....))))). ( -34.70) >DroSim_CAF1 8461 117 + 1 AGAGACCCAGUGUCG-UGCAGACAGUUGUUGAUAAGAAGCAUUUCGUUUCUACGAGUGCCUGAUAAGCGCCAU-UGAGAGAGCGACUGAGGCGAGGUCAAUUGAC-UGCUUUUAAGCAGA ...(((((((((.((-(.(((.((.((((.....((((((.....)))))))))).)).)))....))).)))-)).....((.......))..))))......(-((((....))))). ( -34.10) >DroEre_CAF1 11389 114 + 1 ------CCAGCGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUUGUUUCUACGAGUGCCUGAUAAGCGCCAUUCGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA ------.........((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))((((.(((((....)))))))))....)))). ( -37.00) >DroYak_CAF1 4733 114 + 1 ------CCAGUGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUUGUUUCUACGAGUGCCUGAUAAGCGCCAUUUGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA ------.(((((.(.((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))..)))).).).))))..(((((....))))). ( -35.00) >consensus ______CCAGUGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUUGUUUCUACGAGUGCCUGAUAAGCGCCAUUUGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA ...............((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))((((.(((((....)))))))))....)))). (-32.98 = -33.42 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:49 2006