Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,083,038 – 8,083,158 |
Length | 120 |
Max. P | 0.738727 |
Location | 8,083,038 – 8,083,158 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.00 |
Mean single sequence MFE | -36.14 |
Consensus MFE | -35.02 |
Energy contribution | -35.14 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.18 |
Structure conservation index | 0.97 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8083038 120 - 27905053 UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCUUCCUGGGCAGGACAAACACACACGGACAGCUAUGGCGAAAGAUGGAAUCGAUGAGAAUGCA ..(((((..((..((((.(((.....)))(.((((((((...((((....))))(((((.(....).)))))...........).))))))).).....))))..))..)))))...... ( -36.90) >DroSec_CAF1 7953 120 - 1 UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCCUCCUGGGCAGGACAAACACACACGGACAGCUAUGGCGAAAGAUGGAAUCGAUGAGAAUGCA ..(((((..((..((((.(((.....)))(.((((((((...((((....))))((((..(....)..))))...........).))))))).).....))))..))..)))))...... ( -34.80) >DroSim_CAF1 6407 120 - 1 UGCUCAUUAAUAACGUCAUCCUUAAAGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCCUCCUGGGCAGGACAAACACACACGGACAGCUAUGGCGAAAGAUGGAAUCGAUGAGAAUGCA ..(((((..((..((((.(((.....)))(.((((((((...((((....))))((((..(....)..))))...........).))))))).).....))))..))..)))))...... ( -35.10) >DroEre_CAF1 9682 120 - 1 UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGCAGCGAUGUCCUUCCUGGGCAGGACAAACACACAUGGACGGCUGUGGCGAAAGAUGGAAUCGAUGAGAAUGCA ..(((((..((..((((........((..(.((((((((.......)))))..((((((.(....).))))))......))))..))((....))....))))..))..)))))...... ( -36.90) >DroYak_CAF1 3043 120 - 1 UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCUUCCUGGCCAGGACAAACACACAUGGACAGCUAUGGCGAAAGACGGAAUCGAUGAGAAUGCA ..(((((..((..((((.(((.....)))(.((((((((...((((....))))(((((........)))))...........).))))))).).....))))..))..)))))...... ( -37.00) >consensus UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCUUCCUGGGCAGGACAAACACACACGGACAGCUAUGGCGAAAGAUGGAAUCGAUGAGAAUGCA ..(((((..((..((((.(((.....)))(.((((((((...((((....))))(((((.(....).)))))...........).))))))).).....))))..))..)))))...... (-35.02 = -35.14 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:43 2006