Locus 3032

Sequence ID 3R_DroMel_CAF1
Location 8,081,526 – 8,081,636
Length 110
Max. P 0.517140
window4877

overview

Window 7

Location 8,081,526 – 8,081,636
Length 110
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 82.14
Mean single sequence MFE -41.08
Consensus MFE -28.06
Energy contribution -30.54
Covariance contribution 2.48
Combinations/Pair 1.15
Mean z-score -1.43
Structure conservation index 0.68
SVM decision value -0.03
SVM RNA-class probability 0.517140
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8081526 110 - 27905053
CAUCUGCGGCCACUUGAUCUCGAUUAGGAAGCCCAUGUCGACGGGUAGAUU------UUCCUCAUCCAGGAGGUCGAGGAGCAGGGGAAAGGGGCGCUGCUCCAGCAGCAUUCGAU
..(((.(.((..((((((((((((.(((((((((........)))).....------))))).)))...)))))))))..)).).)))...(((.(((((....))))).)))... ( -41.40)
>DroVir_CAF1 16892 116 - 1
CUGCUGCGGCCACUUCAGCUCGACGAUAACGCCCAGCUGCUCGGGCAGACCGCCCCGGUCCGCAUCGAAGACAUCGCUGAGCAGCGGAAAAGGCAGCUGCGACUCCAAAUGACGAU
..((((((((....((........))....)))..(((((((((((.(((((...))))).))..(((.....)))))))))))).......)))))................... ( -40.20)
>DroSec_CAF1 6446 110 - 1
CAUCUGGGGCCACUUGAUCUCGAUGAGGAAGCCCAUGUCGACAGGCAGAUU------CUCCUCAUCCAAAAGGUCGAGGAGCAGGGGAAAGGGGCGCUGCUCCAGCAGCAUUCGAU
((((.(((..(....)..)))))))..(((((((.((((....))))....------((((((..((....))..))))))..........))))(((((....))))).)))... ( -41.10)
>DroSim_CAF1 4894 110 - 1
CAUCUGGGGCCACUUGAUCUCGAUGAGGAAGCCCAUGUCGACGGGCAGAUU------CUCCUCAUCCAAGAGGUCGAGGAGCAGAGGAAAGGGGCGCUGCUCCUGCAGCAUUCGAU
..(((...((..(((((((((((((((((.((((........)))).....------.))))))))...)))))))))..))...)))...(((.(((((....))))).)))... ( -46.40)
>DroEre_CAF1 8144 110 - 1
CAUCUGGGGCCACUUGAUCUCGAUGAGGAAGCCCAUGUCCAUGUGCAGAUU------CUCCUCAUCCAAGAGGUCAAGAAGCAGGGGAAAGGGGCGCUGCUCCUGCAGCAUUCGAU
((((.(((..(....)..)))))))..(((((((...(((.(.(((...((------..((((......))))..))...))).))))...))))(((((....))))).)))... ( -40.50)
>DroYak_CAF1 1499 110 - 1
CAUCUGGGGCCACUUGAUCUCGAUGAGGAAGCCCAUGUCGACGGACAGAUU------CUUCUCAUCCAAGAGAUCAAAAAGCAGGGGAAAGGGGCGCUGCUCUUGCAGCAUUCGAU
..(((...((...((((((((((((((.(((....((((....))))....------)))))))))...))))))))...))...)))...(((.(((((....))))).)))... ( -36.90)
>consensus
CAUCUGGGGCCACUUGAUCUCGAUGAGGAAGCCCAUGUCGACGGGCAGAUU______CUCCUCAUCCAAGAGGUCGAGGAGCAGGGGAAAGGGGCGCUGCUCCUGCAGCAUUCGAU
..(((...((..(((((((((((((((((.((((........))))............))))))))...)))))))))..))...)))...(((.(((((....))))).)))... (-28.06 = -30.54 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:38 2006