Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,079,574 – 8,079,692 |
Length | 118 |
Max. P | 0.953423 |
Location | 8,079,574 – 8,079,692 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.24 |
Mean single sequence MFE | -26.78 |
Consensus MFE | -23.84 |
Energy contribution | -23.90 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.06 |
Structure conservation index | 0.89 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8079574 118 - 27905053 AAU--AUGUUUUGGGGAAUAUUACGAAACGCCAUGAAACUUUCCCACCAAAGUCAACUAAGCAUCCUGUCAUACUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAAUUGGUA ...--..((((((..........))))))((((......(((((................(((((((((..........)))))))))((((....)))).))))).........)))). ( -26.86) >DroSec_CAF1 4476 120 - 1 AAUAUAUGUUUUGGGGAAUAUUACGAAACGCCAUGAAACUUUCCCACCAAAGUCAACUAAGCAUCCUGUCAUACUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAAUUUUUA ..((((.(((((((((((..(((.(......).)))...)))))))((............(((((((((..........)))))))))((((....)))).))))))))))......... ( -25.80) >DroSim_CAF1 2924 118 - 1 AAU--AUGUUUUGGGGAAUAUUACGAAACGCCAUGAAACUUUCCCACCAAAGUCAACUAAGCAUCCUGUCAUACUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAAUUGGUA ...--..((((((..........))))))((((......(((((................(((((((((..........)))))))))((((....)))).))))).........)))). ( -26.86) >DroEre_CAF1 2985 99 - 1 ACA--AUGUUUUGGGGA-------------------AACUUUCCCACCAAAGUCAAAUAAGCAUCCUGUCAUAUUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAACUGGUA ((.--..((((((((((-------------------.....)))).((...((((((...(((((((((..........))))))))).....))))))..))......))))))..)). ( -27.60) >consensus AAU__AUGUUUUGGGGAAUAUUACGAAACGCCAUGAAACUUUCCCACCAAAGUCAACUAAGCAUCCUGUCAUACUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAAUUGGUA .......(((((((((((......................))))).((............(((((((((..........)))))))))((((....)))).))......))))))..... (-23.84 = -23.90 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:35 2006