Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,152,951 – 1,153,043 |
Length | 92 |
Max. P | 0.571031 |
Location | 1,152,951 – 1,153,043 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -11.03 |
Consensus MFE | -7.50 |
Energy contribution | -8.25 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.68 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.571031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1152951 92 + 27905053 AAAUUCAAUUUCAAUUUCAAUUUCAAUUCCAAUUAUGCAGUCAAUCAAUUUGUAUUGCACAUUAAGUUCACUCGCCAAAAACGCAAACAAAA ...................................(((((((((.....))).))))))..............((.......))........ ( -7.40) >DroSec_CAF1 88499 86 + 1 AAAUUCAAUUUCA------AUUUCAAUUCCAAUUAUGCAGUCAAUCAAUUUGUAUUGCACAUAAAGUUAGCUCGCCAAAAAGGCAAACAAAA .............------................(((((((((.....))).))))))..............(((.....)))........ ( -11.60) >DroSim_CAF1 84345 86 + 1 AAAUUCAAUUUCA------AUUUCAAUUCCAAUUAUGCAGUCAAUCAAUUUGUAUUGCACAUAAAGUUCGCUCGCCAAAAAGGCAAACAAAA .............------................(((((((((.....))).))))))..............(((.....)))........ ( -11.60) >DroEre_CAF1 86898 80 + 1 AAAUUCAAUUU------------CAAUUCCAAUUAUGCAGUCAAUCAAUUUGUUUUGCACAUAAAGUUUGCGCGCCAAAAACGCAAACAAAA ...........------------............(((((.(((.....)))..)))))......(((((((.........))))))).... ( -13.50) >consensus AAAUUCAAUUUCA______AUUUCAAUUCCAAUUAUGCAGUCAAUCAAUUUGUAUUGCACAUAAAGUUCGCUCGCCAAAAACGCAAACAAAA ...................................(((((((((.....))).))))))..............(((.....)))........ ( -7.50 = -8.25 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:54 2006