Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,079,175 – 8,079,295 |
Length | 120 |
Max. P | 0.732424 |
Location | 8,079,175 – 8,079,295 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -32.65 |
Consensus MFE | -28.89 |
Energy contribution | -28.76 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.88 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8079175 120 + 27905053 AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACCGCUCCGGACGCAAGCAUUCAGACUGACGUUUCUAUAUUUGGAAUCAUUUCGGUAACUUGAAAUUUCCCA ............((((((((..((((((((((((((.((((....)))).......(((((((..(.....)..)).))))).......))))))))))))))..))).......))))) ( -32.51) >DroSec_CAF1 4079 120 + 1 AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACCGCUCCGGACGCAAGUAUUCAGACUGACGUUUCUAUAUUUGGAAUCAUUUCGGUGACUCGAAAUUUCCCA ............((((((((.(((((((((((((((..((.(((.(((((((...)))((....))........)))))))))......)))))))))))))).).......)))))))) ( -35.00) >DroSim_CAF1 2527 120 + 1 AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACCGCUCCGGACGCAAGUAUUCAGACUGACGUUUCUAUAUUUGGAAUCAUUUCGGUGACUCGAAAUUUCUCA ............((((((((.(((((((((((((((..((.(((.(((((((...)))((....))........)))))))))......)))))))))))))).).......)))))))) ( -32.00) >DroEre_CAF1 2590 120 + 1 AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACUGCUGCGGACGCAAACAUUCAGACUGACAUUUCUAUAUUUGGAAUCAUUGCGGUGACUCGAAAUUUCCCA ............((((((((...(((....(((.....)))....(((((((((((....)))...........(((...(((((....))))))))..)))))))))))..)))))))) ( -31.10) >consensus AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACCGCUCCGGACGCAAGCAUUCAGACUGACGUUUCUAUAUUUGGAAUCAUUUCGGUGACUCGAAAUUUCCCA ............((((((((..((((((((((((((.((((....))))(((...)))...............................))))))))))))))..))).......))))) (-28.89 = -28.76 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:34 2006