Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,078,259 – 8,078,354 |
Length | 95 |
Max. P | 0.927057 |
Location | 8,078,259 – 8,078,354 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.06 |
Mean single sequence MFE | -31.26 |
Consensus MFE | -10.16 |
Energy contribution | -10.48 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.19 |
Mean z-score | -2.05 |
Structure conservation index | 0.33 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8078259 95 - 27905053 UUGAGAUUUUUAUGGGUGUGUUGCA-------GUUGCAAAAGUGCAAUUAAACGG------CAAACAAU----------GCGAGACCGCAGCUUGUGCC-CAGGUAGA-UCAGAGAUCAA ....(((((...((((..(((((((-------((((((....))))))).....(------((.....)----------))......)))))..)..))-))...)))-))......... ( -28.20) >DroPse_CAF1 26934 106 - 1 UCGAGAUUUCCGUGGGCGUGG--CAAGGUUGCAGUGCC--AGUGCAAUUAAGCAGCUAGAGCAAACAAA----------GCCAAACCGCAGCAUGUGCCUCAGGUAGAGGCAGAGAUCAA ....((((((.((((...(((--(..(((((((.....--..))))))).....((....)).......----------))))..))))......((((((.....)))))))))))).. ( -36.90) >DroYak_CAF1 23244 93 - 1 UUGAGAUUUGUAUGGGUGUGUUGCA-------GUUGCA--AGUGCAAUUAAACGG------CAAACAAA----------GCGAGACCGCAGCUUGUGCC-CAGGUAGA-UCAGAGAUCAA ....((((((..((((..(((((((-------(((((.--...)))))).....(------(.......----------))......)))))..)..))-))..))))-))......... ( -28.10) >DroAna_CAF1 29661 108 - 1 --CAGAUUUGUAUGGGCGAGGUGCAACGUGCUGUUGCA--AGUGCAAUUAAAUGG------CAAACAAAGGGAAACAAAGAGAAACCGCAGCAUGCGUC-CAGGUAGA-GCAGAGAUCAA --..(.((((..((((((..((((..(((...(((((.--...)))))...)))(------(........(....)...(......))).)))).))))-))..))))-.)......... ( -26.20) >DroPer_CAF1 24510 106 - 1 UCGAGAUUUCCGUGGGCGUGG--CAAGGUUGCAGUGCC--AGUGCAAUUAAGCAGCUAGAGCAAACAAA----------GCCAAACCGCAGCAUGUGCCUCAGGUAGAGGCAGAGAUCAA ....((((((.((((...(((--(..(((((((.....--..))))))).....((....)).......----------))))..))))......((((((.....)))))))))))).. ( -36.90) >consensus UCGAGAUUUCUAUGGGCGUGGUGCAA_GU___GUUGCA__AGUGCAAUUAAACGG______CAAACAAA__________GCGAAACCGCAGCAUGUGCC_CAGGUAGA_GCAGAGAUCAA ....((((((......................(((((......)))))....................................(((...((....))....))).......)))))).. (-10.16 = -10.48 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:33 2006