| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,077,769 – 8,077,887 |
| Length | 118 |
| Max. P | 0.807064 |
| Location | 8,077,769 – 8,077,887 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.84 |
| Mean single sequence MFE | -38.34 |
| Consensus MFE | -20.13 |
| Energy contribution | -21.65 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8077769 118 - 27905053 AUACGUGAUCU-UGGAGCAGUCCGAUUUCCUGGUGGAUGUCCUCAGGCAAAUACGGAUGCAGGAUGUGCGCACAGG-UUGGACAGGAUAUCCCCAGGACGUUCACUGAAUAAACAGGUGU ....(((((((-(((....((((((...(((((((.(((((((...(((........)))))))))).))).))))-)))))).((....))))))))...))))............... ( -39.60) >DroPse_CAF1 26399 102 - 1 --ACGUGAUCUUUGGAGCCGUCCGAUUUCCUGGUGGAUAUCCGCUGGCAAAUACGGAUGCAGGAU------ACAGGCUUGGGCAGGAUAUCCACUG----------GGAUAAACAGGUGU --((.((....(((((....)))))..(((..((((((((((.((.(((........))).))..------....((....)).))))))))))..----------)))....)).)).. ( -36.30) >DroYak_CAF1 22758 116 - 1 --ACGUGAUCU-UGGAGCUGUCCGAUUUCCUGGUGGAUGUCCUCGGGCAAAUACGGAUGCAGGAUGUGCGCACAGG-UUGGACAGGAUAUCCCCAGGACAUUCACUGGAUAAACAGGUGC --((.((....-.(((.((((((((...(((((((.(((((((...(((........)))))))))).))).))))-))))))))....)))((((........)))).....)).)).. ( -41.60) >DroAna_CAF1 29203 93 - 1 --ACGUGAUUG-UGGAGCAGUCCGAUUUCCUGGUGGAUGUCCUGGGGCAAAUACGGAUGCAGGAUGUCC------------ACAGGAUAUCC------------CUGGAUAAACAGGUGU --..(.(((((-.....))))))(((.(((((.(((((((((((.(.(......)..).))))))))))------------)))))).)))(------------(((......))))... ( -37.10) >DroPer_CAF1 23957 102 - 1 --ACGUGAUCUUUGGAGCUGUCCGAUUUCCUGGUGGAUAUCCUCUGGCAAAUACGGAUGCAGGAU------ACAGGCUUGGGCAGGAUAUCCACUG----------GGAUAAACAGGUGU --((.((....(((((....)))))..(((..(((((((((((((.(((........))).))).------....((....)).))))))))))..----------)))....)).)).. ( -37.10) >consensus __ACGUGAUCU_UGGAGCAGUCCGAUUUCCUGGUGGAUGUCCUCGGGCAAAUACGGAUGCAGGAUGU_C__ACAGG_UUGGACAGGAUAUCCACAG________CUGGAUAAACAGGUGU ..((.((.........((.((((((((((((((.((....))))))).)))).))))))).((((((...................)))))).....................)).)).. (-20.13 = -21.65 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:32 2006