Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,076,962 – 8,077,060 |
Length | 98 |
Max. P | 0.773739 |
Location | 8,076,962 – 8,077,060 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 76.58 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -13.82 |
Energy contribution | -15.60 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.10 |
Mean z-score | -2.10 |
Structure conservation index | 0.56 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8076962 98 - 27905053 UUUCCACGAGCUGUGAUCUGAAAUUCGAAGCUGGACUAUCUUC-----------UCUAGUUAUAAUUUUCUCAUUGCGAUAAGCCUUUAUCGCCGAAUAGAAUAGCUCU .......(((((((..(((...(((((.(((((((........-----------)))))))..............(((((((....)))))))))))))))))))))). ( -26.30) >DroYak_CAF1 21954 98 - 1 UUUCCACGAGCUGUGAUCUGAAAUUCGAAGCUGGACUAUCUUC-----------UCUAGUUAUAAUUUUCUCACUGCGAUAAGCCUUUAUCGCCGCAUAGAAUAGCUCU .......(((((((..(((((((.....(((((((........-----------))))))).....)))).....(((((((....))))))).....)))))))))). ( -24.40) >DroAna_CAF1 28360 108 - 1 GUUUUACGAACUGCGAUCUGAAACCCGAUGCUGGUCUAUCUCCCUUUGGACUGAUCCAGUUCCAGCUCUCUCUC-CCGAUAAGCCUUUAUCGCCGCCGAGAAUUACACU .......((((((.((((((.....)).....((((((........))))))))))))))))....((((....-.((((((....)))))).....))))........ ( -23.30) >consensus UUUCCACGAGCUGUGAUCUGAAAUUCGAAGCUGGACUAUCUUC___________UCUAGUUAUAAUUUUCUCACUGCGAUAAGCCUUUAUCGCCGCAUAGAAUAGCUCU .......(((((((..(((((((.(.(.((((((.....................)))))).).).)))).....(((((((....))))))).....)))))))))). (-13.82 = -15.60 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:31 2006