Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,076,308 – 8,076,440 |
Length | 132 |
Max. P | 0.959786 |
Location | 8,076,308 – 8,076,405 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.67 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -20.64 |
Energy contribution | -22.00 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.29 |
Mean z-score | -1.80 |
Structure conservation index | 0.59 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672293 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8076308 97 + 27905053 GUGGGAAUUACAGAACCUUCGCCGGUAGCCCAGAUCUCUGGGUCUCUAAAGGUGGGC------AGAGCGGAAGUCCAAGUCGUGAUAAGAGUGGUUCCGAUGU ((.((((((((........((((..((((((((....)))))...)))..))))(((------.(..(....)..)..))).........)))))))).)).. ( -32.80) >DroSim_CAF1 22354 97 + 1 GUGGGAACCGCAGAACCUUUGCUGGUAGCCCAGAUCUCUGGGUCUCUAAAGGUGGGC------AGAGCGGAAGUCCAAGUCGUGAUAAGAGUGGUUCCGAUGU ((.((((((((...(((((...(((..((((((....))))))..)))))))).(((------.(..(....)..)..))).........)))))))).)).. ( -37.80) >DroEre_CAF1 20862 97 + 1 GUGGGAACCAAAGAACCUCUGCUAGUAGCCCACAUCUCUGGGACCCGAAAGGUGGGC------AGAGCGGAAGUCUAAGUCCUGAUAAGAGUGGUUCCGAUGU ((.(((((((.(((...((((((....((((((...((.(....).))...))))))------..))))))..))).....((....))..))))))).)).. ( -35.20) >DroYak_CAF1 21275 103 + 1 GUGGGAACCACAGAACCUCUGCUGGUAGCCCAGAUCUCUGAGUCUCGGAAGGUGGGCAAAGUCAGAGCGGAAGUCCAAGUCCUGAUAAGAGUGGUUCCGAUGU ((.((((((((...(((......))).(((((..(.((((.....)))))..)))))...(((((..(((....))..)..)))))....)))))))).)).. ( -38.70) >DroAna_CAF1 27722 90 + 1 GUGGGAAAC-CAGACCUCUUGCCGGAGGC---GAUCUCGAAGUUUCUUGGACUGG---------AAGCGGAAGUCGGGGGCUAGAUAAAGGUGGUUCCGAUGU .(((....)-))..(((((....)))))(---((..((...((((((......))---------)))).))..)))(((((((........)))))))..... ( -29.00) >consensus GUGGGAACCACAGAACCUUUGCUGGUAGCCCAGAUCUCUGGGUCUCUAAAGGUGGGC______AGAGCGGAAGUCCAAGUCCUGAUAAGAGUGGUUCCGAUGU ((.((((((((....((.((...((..((((((....))))))..))...)).))...........((....))................)))))))).)).. (-20.64 = -22.00 + 1.36)
Location | 8,076,347 – 8,076,440 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -35.22 |
Consensus MFE | -24.98 |
Energy contribution | -27.12 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.17 |
Mean z-score | -2.37 |
Structure conservation index | 0.71 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.959786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8076347 93 + 27905053 GGGUCUCUAAAGGUGGGC------AGAGCGGAAGUCCAAGUCGUGAUAAGAGUGGUUCCGAUGUGGAAACAUCUGGGGCUUCGCUUUGAAU--AUCCCACC ...........(((((((------((((((.((((((..((((..((.......))..))))(((....)))...)))))))))))))...--..)))))) ( -35.10) >DroSim_CAF1 22393 93 + 1 GGGUCUCUAAAGGUGGGC------AGAGCGGAAGUCCAAGUCGUGAUAAGAGUGGUUCCGAUGUGGAAACAUCUGGGGCUUCGCUUUGCAU--AUCCCACC ...........(((((((------((((((.((((((..((((..((.......))..))))(((....)))...))))))))))))))..--...))))) ( -35.20) >DroEre_CAF1 20901 93 + 1 GGGACCCGAAAGGUGGGC------AGAGCGGAAGUCUAAGUCCUGAUAAGAGUGGUUCCGAUGUGGAAACAUCUGGGGCUUCGCUUUGCAU--AUCCCACC (((((((....)).).((------((((((((.(((........))).......((((((((((....))))).)))))))))))))))..--.))))... ( -39.60) >DroYak_CAF1 21314 99 + 1 GAGUCUCGGAAGGUGGGCAAAGUCAGAGCGGAAGUCCAAGUCCUGAUAAGAGUGGUUCCGAUGUGGAAACAUCUGGGGCUUCGCUUUGCAU--AUCCCACC ...........((((((....(.(((((((.((((((....((..........))....(((((....)))))..))))))))))))))..--..)))))) ( -35.70) >DroAna_CAF1 27757 92 + 1 AAGUUUCUUGGACUGG---------AAGCGGAAGUCGGGGGCUAGAUAAAGGUGGUUCCGAUGUGGAAACAUCUGUGGCUUCGUCCGGAAUGGAUCUCUAC ..((((((......))---------)))).((((((((((((((........)))))))(((((....)))))..)))))))((((.....))))...... ( -30.50) >consensus GGGUCUCUAAAGGUGGGC______AGAGCGGAAGUCCAAGUCCUGAUAAGAGUGGUUCCGAUGUGGAAACAUCUGGGGCUUCGCUUUGCAU__AUCCCACC ...........((((((.......((((((.((((((................(....)(((((....)))))..))))))))))))........)))))) (-24.98 = -27.12 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:30 2006