Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,075,726 – 8,075,839 |
Length | 113 |
Max. P | 0.500000 |
Location | 8,075,726 – 8,075,839 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 84.83 |
Mean single sequence MFE | -31.26 |
Consensus MFE | -21.04 |
Energy contribution | -19.76 |
Covariance contribution | -1.28 |
Combinations/Pair | 1.33 |
Mean z-score | -1.65 |
Structure conservation index | 0.67 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8075726 113 - 27905053 AUGCACUCGGUUUAUUCUAGG-AUGGACUGGAAUUAUUGGCCCGUUUUGGAUUUUUGGGCUAAGUUCAAAGGUCAAGCUCGAGAAGUAUUUUCUAAAAACGGAACAGAAAUUGG ......((((((((((....)-)))))))))((((.(((..(((((((.(((((((((((...)))))))))))......((((.....))))..)))))))..))).)))).. ( -30.50) >DroSim_CAF1 21775 113 - 1 AUGCACUCGGUUUAUUCUAGG-AUGGACUGGAAUUAUUGGCCCGUUUUGGAUUUUUGGGCUAAGUUCAAAGGUCAAGCUCGAGGAGUAUGUUUUAAAAACCGAGCAGAAAUUGG .....((((((((....((((-((.((((.((((..((((((((...........))))))))))))...))))..((((...))))..)))))).)))))))).......... ( -31.10) >DroEre_CAF1 20286 113 - 1 AUGCACUCGUCUUAUUCCAGG-AUGGACUGGAAUUAUUGGCCCGUUCUGGAUUUUUGGGAUAAGUUCAAAGGUCAAGCUCGGGAAGUAUGUACUAAAAGCGGAGCAGAAAUUGG .(((.(.((.((((((((((.-.....)))))))((((..((((..((.((((((((((.....)))))))))).))..)))).))))........)))))).)))........ ( -32.40) >DroYak_CAF1 20702 113 - 1 AUGCACUCGACUUAUUCUAGG-AUGGACUGGAAUUAUUGGCCCGUUCUGGAUUUUUGGGCUAAGUUCAAAGGUCAAGCUCGGGAAGUAUGCACUAAAAACGGAGCAGAAAUUGG .(((.(.((....(((((((.-.....)))))))((((..((((..((.(((((((((((...))))))))))).))..)))).))))...........))).)))........ ( -30.70) >DroAna_CAF1 27160 106 - 1 ----ACU----AUUUUCUGGGCAGGGACUGGAAAUAUUGGCCCAUUCUGGAUUUUUGGGCUAAGUUCAGAGGUCACGAUCAAAAAUUGUGUACAAGAAAUAGAACAGAAUUUGG ----.((----(..(((((..(.....(((((....((((((((...........)))))))).)))))..((((((((.....)))))).))........)..)))))..))) ( -31.60) >consensus AUGCACUCGGCUUAUUCUAGG_AUGGACUGGAAUUAUUGGCCCGUUCUGGAUUUUUGGGCUAAGUUCAAAGGUCAAGCUCGAGAAGUAUGUACUAAAAACGGAGCAGAAAUUGG .............(((((((.......))))))).........(((((((((((((((((...)))))))))))..(((.....)))............))))))......... (-21.04 = -19.76 + -1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:26 2006