Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,073,735 – 8,073,851 |
Length | 116 |
Max. P | 0.999984 |
Location | 8,073,735 – 8,073,851 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 92.13 |
Mean single sequence MFE | -40.70 |
Consensus MFE | -36.92 |
Energy contribution | -36.24 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.17 |
Mean z-score | -2.37 |
Structure conservation index | 0.91 |
SVM decision value | 3.70 |
SVM RNA-class probability | 0.999538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8073735 116 + 27905053 CGAAAUUGAUACAGAUCCUGGGCAGGAUCUCCUCCUGCCAAGGGGUUGCAACUGUGGCAACGAGUUGAAUUCGAGUCGCGACAAUUGCGUAUACUCGCUGUUUGUUUCUUUCUUUU .(((((....((((.((((.(((((((.....))))))).))))....(((((.((....)))))))....((((((((((...)))))...)))))))))..)))))........ ( -39.50) >DroSec_CAF1 19781 116 + 1 CGAAAUUGAUACAGAUCCUGGGCAGGAUCUCCUCCUGCCAAGGGGUUGCAACUGUGGCAACGAGUUGAGUUCGAGUCGCGACAAUUGCGGAUGCUCGCUGUUUGUUUCUUUCGCUU (((((..((.(((((((((.(((((((.....))))))).))).(((((.......))))).(((.((((.....((((((...))))))..))))))))))))).)))))))... ( -40.10) >DroSim_CAF1 19774 116 + 1 CGAAAUUGAUACAGAUCCUGGGCAGGAUCUCCUCCUGCCAAGGGGUUGCAACUGUGGCAACGAGUUGAGUUCGAGUCGCGACAAUUGCGUAUGCUCGCUGUUUGUUUCUUUCGCUU (((((..(((((((.((((.(((((((.....))))))).))))....(((((.((....)))))))....((((((((((...)))))...)))))))))..)))..)))))... ( -40.00) >DroEre_CAF1 18280 113 + 1 CGAAAUUGAUACAUAUCCUGGGCAGGAUCUCCUCCUGCCAAGGGGUUGCAAUUGCGGCAACGAGUUGCGCUUGAGUCGCAACAAUUGCGGAUAUUCUCUGUUUGUUUCUUU---UU .(((((.((((.((((((..(((((((.....)))))))........((((((.((....)).(((((((....).))))))))))))))))))....)))).)))))...---.. ( -41.10) >DroYak_CAF1 18658 113 + 1 CGAAACUGAUACAGAUCCUGGGCAGGAUCUCCUCCUGCCAAGGGGUUGCAACUGAGGCAACGAGUUGCGUUCGAGUCGCGACAUUUGCGGAUAUUCUCUGUUUGUUUCUUU---UU .(((((....(((((((((.(((((((.....))))))).))))(((((.((((((((((....)))).))).))).)))))..............)))))..)))))...---.. ( -42.80) >consensus CGAAAUUGAUACAGAUCCUGGGCAGGAUCUCCUCCUGCCAAGGGGUUGCAACUGUGGCAACGAGUUGAGUUCGAGUCGCGACAAUUGCGGAUACUCGCUGUUUGUUUCUUUC__UU .(((((....((((.((((.(((((((.....))))))).))))....(((((.((....))))))).....(((((((((...)))))...)))).))))..)))))........ (-36.92 = -36.24 + -0.68)
Location | 8,073,735 – 8,073,851 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 92.13 |
Mean single sequence MFE | -39.24 |
Consensus MFE | -36.40 |
Energy contribution | -36.76 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -3.40 |
Structure conservation index | 0.93 |
SVM decision value | 5.34 |
SVM RNA-class probability | 0.999984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8073735 116 - 27905053 AAAAGAAAGAAACAAACAGCGAGUAUACGCAAUUGUCGCGACUCGAAUUCAACUCGUUGCCACAGUUGCAACCCCUUGGCAGGAGGAGAUCCUGCCCAGGAUCUGUAUCAAUUUCG ....((((.......((((.........((((((((.(((((.............))))).))))))))....(((.(((((((.....))))))).)))..)))).....)))). ( -38.72) >DroSec_CAF1 19781 116 - 1 AAGCGAAAGAAACAAACAGCGAGCAUCCGCAAUUGUCGCGACUCGAACUCAACUCGUUGCCACAGUUGCAACCCCUUGGCAGGAGGAGAUCCUGCCCAGGAUCUGUAUCAAUUUCG ...(((((.......((((.........((((((((.(((((.............))))).))))))))....(((.(((((((.....))))))).)))..)))).....))))) ( -39.42) >DroSim_CAF1 19774 116 - 1 AAGCGAAAGAAACAAACAGCGAGCAUACGCAAUUGUCGCGACUCGAACUCAACUCGUUGCCACAGUUGCAACCCCUUGGCAGGAGGAGAUCCUGCCCAGGAUCUGUAUCAAUUUCG ...(((((.......((((.........((((((((.(((((.............))))).))))))))....(((.(((((((.....))))))).)))..)))).....))))) ( -39.42) >DroEre_CAF1 18280 113 - 1 AA---AAAGAAACAAACAGAGAAUAUCCGCAAUUGUUGCGACUCAAGCGCAACUCGUUGCCGCAAUUGCAACCCCUUGGCAGGAGGAGAUCCUGCCCAGGAUAUGUAUCAAUUUCG ..---.............((..((((((((((((((.(((((.............))))).))))))))........(((((((.....)))))))..))))))...))....... ( -39.02) >DroYak_CAF1 18658 113 - 1 AA---AAAGAAACAAACAGAGAAUAUCCGCAAAUGUCGCGACUCGAACGCAACUCGUUGCCUCAGUUGCAACCCCUUGGCAGGAGGAGAUCCUGCCCAGGAUCUGUAUCAGUUUCG ..---...(((((..(((((.................((((((.((..((((....)))).))))))))....(((.(((((((.....))))))).))).)))))....))))). ( -39.60) >consensus AA__GAAAGAAACAAACAGCGAGUAUCCGCAAUUGUCGCGACUCGAACUCAACUCGUUGCCACAGUUGCAACCCCUUGGCAGGAGGAGAUCCUGCCCAGGAUCUGUAUCAAUUUCG ........((((...((((.........((((((((.(((((.............))))).))))))))....(((.(((((((.....))))))).)))..)))).....)))). (-36.40 = -36.76 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:25 2006