| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,071,297 – 8,071,410 |
| Length | 113 |
| Max. P | 0.889671 |
| Location | 8,071,297 – 8,071,410 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.80 |
| Mean single sequence MFE | -36.35 |
| Consensus MFE | -16.33 |
| Energy contribution | -15.14 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8071297 113 + 27905053 -GAGGUGACAAGCUG-UUUUGGUCCAGUUAAACAACUGAACU-UCUG-GUGUCUGAUGGACAUUUGACCGUUAGAACUGGACCAAAACGCAGCUUUCCCUGGGAAAC--U-UAAGAUUCU -.(((.((.((((((-(((((((((((((......((((...-((..-(((((.....)))))..))...))))))))))))))))..))))))))))))((....)--)-......... ( -42.10) >DroPse_CAF1 17197 117 + 1 AAAGGUGACAAGCUGUUUUUGGUCCAGUAAAAUUGCUGGACCGUCUGCGCAUUUGAUGGACUUUUGACCGUUGGAACUCAAGUAAAACAGAUACUUCCAUGGGAAUCAGCUUUGGAC--- ...(....)((((((.(((((((((((((....)))))))))(((((....((..((((.(....).))))..))((....))....))))).........)))).)))))).....--- ( -35.30) >DroEre_CAF1 15864 114 + 1 -GAGGUGACAAGCUG-UUUUGGUCCAGUUAAACAACUGAACU-UCUG-GCGUCUGAUGGACAUUUGACCGUUAAAACUGGACCAAAACAGAGAUUUUCAUGGGAAAC--UUUAGGAUUCG -..(....)...(((-(((((((((((((........((.(.-...)-...))((((((........)))))).)))))))))))))))).((.((..(.((....)--).)..)).)). ( -36.30) >DroYak_CAF1 16241 114 + 1 -GAGGUGACAAGCUG-UUUUGGUCCAGUUAAACAACUGAACU-UCGU-GCGUCUGAUGGACAUUUGACCGUUAGAACUGGACCAAAACGGAGAUUUUCAUGGGAAAC--UUUUAGAUUCU -..(....)...(((-(((((((((((((..((.((......-..))-..))(((((((........)))))))))))))))))))))))(((.(((...((....)--)...))).))) ( -38.20) >DroAna_CAF1 22971 115 + 1 -UAGGUGACAAGCUGGCUUUGGUCCAGUUAAGCAACUGAACU-UUUG-CCAUCUGAUGGACAUUUGACCGUUACAACUAAAGCAAAGUCCAGUUUUCCAUGGGAAAC--UUUCAUAAUUU -..(....).((.((((...(((.(((((....))))).)))-...)-))).))..(((((.((((....(((....)))..)))))))))((((((....))))))--........... ( -29.50) >DroPer_CAF1 17311 117 + 1 AAAGGUGACAAGCUGCUUUUGGUCCAGUAAAACUGCUGGACCGUCUGCGCAUUUGAUGGACUUUUGACCGUUGGAACUGAAGUAAAACAGAUACUUCCAUGGGAAUCAGCUUUGGAC--- ((((.(((...((.((...((((((((((....))))))))))...)))).((..((((.(....).))))..))...((((((.......))))))........))).))))....--- ( -36.70) >consensus _GAGGUGACAAGCUG_UUUUGGUCCAGUUAAACAACUGAACU_UCUG_GCAUCUGAUGGACAUUUGACCGUUAGAACUGAACCAAAACAGAGAUUUCCAUGGGAAAC__UUUUAGAUUCU ...((.......(((.(((((((.(((((....))))).))..........((((((((........)))))))).......))))))))......))...................... (-16.33 = -15.14 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:19 2006