Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,151,100 – 1,151,194 |
Length | 94 |
Max. P | 0.630008 |
Location | 1,151,100 – 1,151,194 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.91 |
Mean single sequence MFE | -15.97 |
Consensus MFE | -11.09 |
Energy contribution | -11.65 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -1.65 |
Structure conservation index | 0.69 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1151100 94 + 27905053 CCAAUGUUAC-----------CAAUCGGAGGUUUAUCAACCUGUUUAAAGAAUCUUGACUUUAAACAGCCAACUCAUUGCUUUCAACACGAACUCAGCUCCGAAU ..........-----------...((((((..........((((((((((........))))))))))........(((..(((.....)))..))))))))).. ( -20.30) >DroSec_CAF1 86627 94 + 1 CCAAUGUUAC-----------CAAUCAAAGGUUUAUCAACCUGUUUAAAGAAUCUUGUCUUUAAGCACCCAACUCAUUGCUUUUGACGCGAAUUCAGCUCCAAAU .(((((....-----------.......(((((....)))))(((((((((......)))))))))........)))))..((((..((.......))..)))). ( -17.50) >DroSim_CAF1 82473 94 + 1 CCAAUGUUAC-----------CAAUCAAAGGUUUAUCAACCUGUUUAAAGAAUCUUGUCAUUAAGCACCCAACUCAUUGCUUUCGACGCGAAUUCAGCUCCAAAU .....(((..-----------.......(((((....))))).......(((((.((((...(((((..........)))))..)))).).)))))))....... ( -13.40) >DroEre_CAF1 85058 103 + 1 CCAAUGUUAACAGUACAUUGACAAUCAAGGGUCAAUAAACCUGUUCAAAGAAUCUUGACUUUACACA-CUAACUCAUUGCUUCCGACGCGAA-UCAACUCCAAAU .((((((.......)))))).......((((((((.....((......))....)))))))).....-........((((.......)))).-............ ( -12.70) >consensus CCAAUGUUAC___________CAAUCAAAGGUUUAUCAACCUGUUUAAAGAAUCUUGACUUUAAACACCCAACUCAUUGCUUUCGACGCGAAUUCAGCUCCAAAU .(((((......................(((((....)))))((((((((........))))))))........))))).......................... (-11.09 = -11.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:54 2006