Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,067,125 – 8,067,221 |
Length | 96 |
Max. P | 0.560971 |
Location | 8,067,125 – 8,067,221 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 85.74 |
Mean single sequence MFE | -29.94 |
Consensus MFE | -20.04 |
Energy contribution | -20.52 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.25 |
Mean z-score | -1.82 |
Structure conservation index | 0.67 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8067125 96 + 27905053 AAUUUAAGCCAUGUAUGGUAAGCCCACUCACAUGAAUUCCUGCCUGCAGAUGGAUUGU--GUGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGA---- .......((((....))))((((((((((((((.((((((((....)))..)))))))--))))))).......((((((...)))))).)))))...---- ( -31.10) >DroSec_CAF1 13204 95 + 1 AAUUUAAGCCAUGUAUGGUAAGCCCACUCACAUGAAUUCCUGCCCACAGAUG-AUUGU--GUGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGA---- .....(((((...((.(((.(((((..((((((........(((((((.(..-..).)--))))))))))))....)))))..))).)).)))))...---- ( -31.80) >DroSim_CAF1 13214 97 + 1 AAUUUAAGCCAUGUAUGGUAACCCCACUCACGUGAAUUUCUGCCCACAGAUG-AUUGUGUGUGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGA---- .....(((((..........(((((((.((((......((((....))))..-..)))).))))).))......((((((...)))))).)))))...---- ( -29.80) >DroEre_CAF1 11751 96 + 1 AACUUAAGCCAUGUAUGGCAUGCCCACUCCCAUGAAUCCUUCCCUGCAGA----UUGU--GCGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGGGUGA .......((((....))))..(((((...((.....(((...((((((..----...)--)))))...).))..((((((...)))))).))...))))).. ( -28.30) >DroYak_CAF1 12005 92 + 1 AACCUAAGCCAUGUAUGGAAAGCCCACUCCCAAGAACUCCUCCCUGCAGA----UUGU--GUGGGUGUGUGAAGUAGGGCUAAGCUCCAAGGCUUGGA---- ...(((((((.....((((.((((((((..((...((....(((.(((..----...)--))))).)).)).))).)))))....)))).))))))).---- ( -28.70) >consensus AAUUUAAGCCAUGUAUGGUAAGCCCACUCACAUGAAUUCCUGCCUGCAGAUG_AUUGU__GUGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGA____ ..((.(((((...((.(((..((((..((((((........((((((.............))))))))))))....))))...))).)).))))).)).... (-20.04 = -20.52 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:17 2006