Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,065,108 – 8,065,223 |
Length | 115 |
Max. P | 0.753821 |
Location | 8,065,108 – 8,065,223 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -40.82 |
Consensus MFE | -23.80 |
Energy contribution | -26.50 |
Covariance contribution | 2.70 |
Combinations/Pair | 1.18 |
Mean z-score | -2.38 |
Structure conservation index | 0.58 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8065108 115 - 27905053 UAAGCGGUUGACGCGAUUCG-GGCUUAAUUGCUUUUACACCCAGUG---GGGAUGAUGGAUCGUAGGGCGAUUGAGGAGAUCAUUGGGCCUCUUAAAGUGCGGAAGUACGCCGACCGCA ...((((((...((((((((-(((......))))...(((((....---))).))..)))))))..(((.....(((((..(....)..)))))...((((....))))))))))))). ( -44.40) >DroPse_CAF1 9592 92 - 1 UAAGCAGUUGACACGAUUCGCGGCUUAAUUGCUUUUCCAACCAAUA---UGAAUGAUGGAUGAAGAGUCGAUAGAGCGAAUA---------------GAAAGGAAGUACC--------- .((((((((((..((.....))..))))))))))((((..(((.((---....)).)))........(((......)))...---------------....)))).....--------- ( -17.40) >DroSec_CAF1 11268 115 - 1 UAAGCGGUUGACGCGAUUCG-GGCUUAAUUGCUUUUACACCCAGUG---GGGAUGAUGGAUCGUAGGGCGAUUGAGGAGAUCAUUGGGCCUCUUAAAGUACGGAAGUACGCCGACCGCA ...((((((...((((((((-(((......))))...(((((....---))).))..)))))))..(((.....(((((..(....)..)))))...((((....))))))))))))). ( -44.40) >DroSim_CAF1 11259 115 - 1 UAAGCGGUUGACGCGAUUCG-GGCUUAAUUGCUUUUACACCCAGUG---GGGAUGAUGGAUCGUAGGGCGAUUGAGGAGAUCAUUGGGCCUCUUAAAGUACGGAAGUACGCCGACCGCA ...((((((...((((((((-(((......))))...(((((....---))).))..)))))))..(((.....(((((..(....)..)))))...((((....))))))))))))). ( -44.40) >DroEre_CAF1 9691 115 - 1 UAAGCGGUUGACGCGAUUCG-GGCUUAAUUGCCUUUACACCCAGUG---GGGAUGAUGGAUCGUGGGUCGAUUGAGCAGAUCAUUGGGCCUCUUAAAGUGCGGAUGUACUCUGACCGCA ...((((((..(((((((((-(((......))))...(((((....---))).))..))))))))((((.(.(((.....))).).))))......(((((....)))))..)))))). ( -42.70) >DroYak_CAF1 9900 117 - 1 UAAGCGGUUGACGAGAUUCG-GGCUUAAUUGCCU-UACACCCAGUGGUUGGGAUGAUGGAUCGUAGGGCGAUUGAGGAGGUUGUUGGGCCUCCUAAAGUGCGGAUGUACUCUGACCGCA ...((((((((..(.(((((-.((((((((((((-(((.(((((...)))))..((....))))))))))))).(((((((......))))))).)))).))))).)..)).)))))). ( -51.60) >consensus UAAGCGGUUGACGCGAUUCG_GGCUUAAUUGCUUUUACACCCAGUG___GGGAUGAUGGAUCGUAGGGCGAUUGAGGAGAUCAUUGGGCCUCUUAAAGUACGGAAGUACGCCGACCGCA ...(((((((..(((((((..(((......)))....(((((.......))).))..)))))))(((.(.(.(((.....))).).).)))......((((....))))..))))))). (-23.80 = -26.50 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:11 2006