Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,063,861 – 8,063,969 |
Length | 108 |
Max. P | 0.580144 |
Location | 8,063,861 – 8,063,969 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.10 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -7.74 |
Energy contribution | -7.88 |
Covariance contribution | 0.15 |
Combinations/Pair | 1.58 |
Mean z-score | -2.24 |
Structure conservation index | 0.27 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8063861 108 + 27905053 ACA----------UUGGACUUGGCCAAAGCUUUCUGCGUUUCAAAUCCGCCCAGUGUUGAAAAUAUCUUGUUGUGAGUGAAUGGCAACAAAACAUUC-AUAACA-AUUAUUUUCAUAAAC (((----------((((....(((....)))....(((.........))))))))))((((((((..((((((((((((..((....))...)))))-))))))-).))))))))..... ( -32.20) >DroSec_CAF1 10021 108 + 1 ACA----------UUGGAUUUGGCCGAAGCUUUCUGCAUUUCAAAUCCGCCCAGUGUUGAAAAUACCUUGUUGUGAGUGAAUGGCAAUAAAACAUUC-AUGACA-AUUAUUUUCAUAAGC ...----------..((((((((..((.((.....)).)))))))))).....((..((((((((..((((..((((((.............)))))-)..)))-).))))))))...)) ( -27.42) >DroSim_CAF1 10011 108 + 1 ACA----------UUGGAUUUGGCCGAAGCUUUCUGCAUUUCAAAUCCGCCUAGUGUUGAAAAUAUCUUGUUGUGAGUGAAGGGCAACAAAACAUUC-AUGACA-AUUAUUUUCAUAAGC ...----------..((((((((..((.((.....)).)))))))))).....((..((((((((..((((..((((((...(....)....)))))-)..)))-).))))))))...)) ( -31.30) >DroEre_CAF1 8482 108 + 1 AUA----------UUAAUCCUGGCCGAAGUUUUCUGCGCUUCAAAUCCGCACAGUGUUGAAAUUAUCUUGUUGUGAGUGAAUGGCAACAAAAUAUUC-AUGACG-AUAAUUUUCAUAAGC ...----------......(((((.(((((.......)))))......)).)))(((.(((((((((..((..((((((..((....))...)))))-)..)))-)))))))).)))... ( -23.60) >DroYak_CAF1 8666 108 + 1 AUU----------UUGGUCUGGGCCGAAGCUUUCUCCAUAUGAAAUCCGCUCAGCGUUGAAAUUAGCUUGUUGUGCGUGAAUGGCAACACAACAUUC-AUGACG-AUAAUUUUCAUUAGC ...----------...(.((((((.((...((((.......)))))).)))))))..(((((.....(((((((.((((((((.........)))))-))))))-)))).)))))..... ( -26.70) >DroPer_CAF1 8364 118 + 1 AGAUGCAUUCAGAUGAAUCAUCGCUUCUGAUUUUCGCUUUUCAAAGCCGAAGAGCGUUGAGAUAGCCCGGUUCUGGAGCCACGGAAAUGUAAU--UAAGUGAUAUGUCACUUCAAUAAGA .((((.((((....))))))))((((((.(....((((((((......)))))))).).))).))).((.(((((......))))).))..((--(((((((....)))))).))).... ( -31.00) >consensus ACA__________UUGGACUUGGCCGAAGCUUUCUGCAUUUCAAAUCCGCCCAGUGUUGAAAAUAUCUUGUUGUGAGUGAAUGGCAACAAAACAUUC_AUGACA_AUUAUUUUCAUAAGC .............((((......))))..........................((..(((((......(((((((((((..((....))...))))).))))))......)))))...)) ( -7.74 = -7.88 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:09 2006