| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,061,430 – 8,061,548 |
| Length | 118 |
| Max. P | 0.537783 |
| Location | 8,061,430 – 8,061,548 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.83 |
| Mean single sequence MFE | -33.40 |
| Consensus MFE | -21.12 |
| Energy contribution | -23.57 |
| Covariance contribution | 2.45 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8061430 118 + 27905053 CUGUGUGGGCGCUUGUCUCGAAAGCAGCGAGAACCAUACUGCUGCAUUCGGCACCU--AACUCCAUUAAGGACAUUUCGUCAUUACGAAAAAGUUCAAUCGCCCUGUGUAUAACAGUCUU ..((((((...(((((..(....)..)))))..))))))...(((((..(((....--...(((.....)))..((((((....))))))..........)))..))))).......... ( -31.90) >DroPse_CAF1 4706 118 + 1 CUGUUACGGCGGUUGUCUCGAAGCUAGCCCCAACCAUGAUACUGCACUCGCCCUCGGCAUCUUCGU--AUGAAAAUUCUCCGCUUUUUAGAAAUUCCACAACCCGACUGAUCACUGUGUU ....(((((.(((((((.(((((...(((.((....)).....((....))....)))..))))).--.((((((........))))))...............))).)))).))))).. ( -18.70) >DroSec_CAF1 7568 118 + 1 CCGUGUGGCCGCUUGUCUCGAAUGCAGCGAGAACCAUACUGCUGCAUUCGGCACGU--AACUCCUUUAAGGACAUUUCGUCAUUACGAAAAAGUUCUAUCGCCCUGUGUAUAACAGUCUU .((((((((.....))).((((((((((.((.......))))))))))))))))).--..........(((((.((((((....))))))..)))))......((((.....)))).... ( -34.10) >DroSim_CAF1 7562 118 + 1 CCGUGUGGCCGCUUGUCUCGAAUGCAGCGAGUAUCAUACUGCUGCAUUCGGCACGU--AACUCCAUUAAGGACAUUUCGUCAUUACGAAAAAGUUCUAUCGCCCUGUGUAUAACAGUCUU .((((((((.....))).((((((((((.((((...))))))))))))))))))).--..........(((((.((((((....))))))..)))))......((((.....)))).... ( -36.20) >DroEre_CAF1 6068 118 + 1 CCGUGUGGGCGGUUGUCUCGAAUGCGGCGAGAACCAUACUGCUGCAUUCGGCACAU--AACUCAGUUAGGGAUAUUUCGUCAUUACGAAAAAGUUCUAUUGCCCAGUGUAUAACCGUCUU ......((((((((((..((((((((((.((.......))))))))))))((((..--....((((.((((...((((((....))))))...))))))))....)))))))))))))). ( -39.00) >DroYak_CAF1 6245 118 + 1 CCGUGUGGGCGCUUGUCUCGAAUGCGGCGAGAACCAUACUGCUGCAUUCGGCACGU--AACUCCAUUAGGGAUAUUUCGUCAUUACGAAAAAGUUCUAGCGCCCAGUGUAAAACAGUCCU .....(((((((..((.(((((((((((.((.......))))))))))))).))..--........(((((...((((((....))))))...))))))))))))............... ( -40.50) >consensus CCGUGUGGGCGCUUGUCUCGAAUGCAGCGAGAACCAUACUGCUGCAUUCGGCACGU__AACUCCAUUAAGGACAUUUCGUCAUUACGAAAAAGUUCUAUCGCCCUGUGUAUAACAGUCUU ......(((((...((.((((((((((((..........)))))))))))).))..............(((((..((((......))))...)))))..)))))................ (-21.12 = -23.57 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:07 2006