Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,057,217 – 8,057,312 |
Length | 95 |
Max. P | 0.746239 |
Location | 8,057,217 – 8,057,312 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.35 |
Mean single sequence MFE | -39.55 |
Consensus MFE | -21.41 |
Energy contribution | -22.13 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.20 |
Mean z-score | -2.09 |
Structure conservation index | 0.54 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8057217 95 - 27905053 UCUUGGUCUUGGUCUCUGGAAC---UCAGGCGACGGUUCUGGGUCCCAGGGUCUGGGUCUGGAUGUGGGUC------UGGGUCUGGGUCUGAGCCAAAGUCCAG ...(((.(((((.((((((.((---((((((....).))))))).)))((..(..(..(..(((....)))------..)..)..)..))))))).))).))). ( -40.50) >DroSec_CAF1 5270 84 - 1 -----------GUCUCUGGAAC---UCUGGCGACGGUUCUGGGUCCCAGGGUCUGGGUAUGGAUGUGGGUC------UGGGUCUGGGUCUGAGCCAAAGUCCAG -----------....(((((.(---(.((((..(((..(..((.((((.(..(((.((....)).)))..)------))))))..)..))).)))).))))))) ( -34.50) >DroSim_CAF1 5266 90 - 1 -----GUCUUGGUCUCUGGAAC---UCUGGCGACGGCUCUGGGUCCCAGGGUCUGGGUCUGGAUGUGGGUC------UGGGUCUGGGUCUGAGCCAAAGUCCAG -----(.(((.(((.(..(...---.)..).)))(((((.(((.((((.(..(..(..((......))..)------..)..))))))))))))).))).)... ( -37.30) >DroEre_CAF1 2086 95 - 1 ---------UGGUCUCUGGAACGUCUUUGGCGACGGCUCUGGGUCCCAGGGUCUGGAUCUGGGUCUGGGUCCGGGUCUGGGUCUGGGUCUGAGCCAAAGUCCAG ---------......(((((....(((((((..(((..(..((.((((.(..((((((((......))))))))..)))))))..)..))).)))))))))))) ( -46.40) >DroYak_CAF1 2120 94 - 1 -------CUUGGUCUCUGGAAC---UCUGGCGACGGCUCUGGGUCCCAGGGUCUGGAUCUAGAUCUGGGUCUGGGUCUGGGUCUCGGUCUGAGCCAAAGUCCAG -------........(((((.(---(.((((..(((..(((((.((((.(..(..((((((....))))))..)..))))).))))).))).)))).))))))) ( -45.70) >DroAna_CAF1 2009 77 - 1 -----------GUC-------C---CAUGGCCUGGGGUCUGGGGUCUCUGGUCUGGAUAUGGCUCCGGGUC------UGGGUCUGGGUCUGAGCCAAAGUCCAG -----------..(-------(---((.(((((((((((....((((.......))))..)))))))))))------)))).(((((.((.......))))))) ( -32.90) >consensus _________UGGUCUCUGGAAC___UCUGGCGACGGCUCUGGGUCCCAGGGUCUGGAUCUGGAUCUGGGUC______UGGGUCUGGGUCUGAGCCAAAGUCCAG ...............(((((.......((((..(((..(..((.((((.(..(((.((....)).)))..)......))))))..)..))).))))...))))) (-21.41 = -22.13 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:06 2006