Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,054,281 – 8,054,395 |
Length | 114 |
Max. P | 0.575170 |
Location | 8,054,281 – 8,054,395 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.92 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -22.89 |
Energy contribution | -23.00 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.12 |
Mean z-score | -1.28 |
Structure conservation index | 0.89 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8054281 114 + 27905053 --CGAAUGAGUUUUCCACU-UCGCAGGCAAUUAAUUUUCGCACUCGC---UUGCAAGUGGAAAAUUAAUUGCGUGUUUUGCAUAAUCAGUAAAUUGGUCGUUUAUUUUAGUACUUAAUUU --.((((((.....(((..-..(((.(((((((((((((.((((.(.---...).))))))))))))))))).)))(((((.......))))).)))))))))................. ( -29.50) >DroPse_CAF1 140181 119 + 1 CCAGAAUGAGUUUUCCACUCUCUCAGGCAAUUAAUUUUGGU-CUGGAAAAAAGCGAGCGGAAAAUUAAUUGCGUGUUUUGCAUAAUCAGUAAAUUGGUCGUUUAUUUUAGUACUUAAUUU ((((....((((((((.(((.(((((((((......)).))-)))......)).))).))))))))...((((.....))))...........))))....................... ( -21.50) >DroEre_CAF1 125689 114 + 1 --CGAAUGAGUUUUCCGCC-UCGCAGGCAAUUAAUUUUCGCACUCGA---CUGCAAGUGGAAAAUUAAUUGCGUGUUUUGCAUAAUCAGUAAAUUGGUCGUUUAUUUUAGUACUUAAUUU --....(((((.....((.-..(((.(((((((((((((.((((...---.....))))))))))))))))).)))...))......(((((((.....))))))).....))))).... ( -28.90) >DroYak_CAF1 125587 114 + 1 --CGAAUGAGUUUUCCGCU-UCGCAGGCAAUUAAUUUUCGCACUCGG---UUGCAAGUGGAAAAUUAAUUGCGUGUUUUGCAUAAUCAGUAAAUUGGUCGUUUAUUUUAGUACUUAAUUU --....(((((.....((.-..(((.(((((((((((((.((((.(.---...).))))))))))))))))).)))...))......(((((((.....))))))).....))))).... ( -29.70) >DroAna_CAF1 128730 115 + 1 --CGAAUGAGUUUUCCACUCUCUUAGGCAAUUAAUUUUCGCAUUCGU---UUCCAUGUGGAAAAUUAAUUGCGUGUUUUGCAUAAUCAGUAAAUUGGUCGUUUAUUUUAGUACUUAAUUU --.((((((.....(((......((.(((((((((((((((((....---....)))).))))))))))))).)).(((((.......))))).)))))))))................. ( -22.50) >DroPer_CAF1 138731 119 + 1 CCAGAAUGAGUUUUCCACUCUCUCAGGCAAUUAAUUUUGGU-CUGGAAAAAAGCGAGCGGAAAAUUAAUUGCGUGUUUUGCAUAAUCAGUAAAUUGGUCGUUUAUUUUAGUACUUAAUUU ((((....((((((((.(((.(((((((((......)).))-)))......)).))).))))))))...((((.....))))...........))))....................... ( -21.50) >consensus __CGAAUGAGUUUUCCACU_UCGCAGGCAAUUAAUUUUCGCACUCGA___UUGCAAGUGGAAAAUUAAUUGCGUGUUUUGCAUAAUCAGUAAAUUGGUCGUUUAUUUUAGUACUUAAUUU ...((((((.....(((......((.(((((((((((((.((((.(.......).))))))))))))))))).)).(((((.......))))).)))))))))................. (-22.89 = -23.00 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:03 2006