Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,053,841 – 8,053,939 |
Length | 98 |
Max. P | 0.989569 |
Location | 8,053,841 – 8,053,939 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -37.17 |
Consensus MFE | -33.44 |
Energy contribution | -34.17 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.06 |
Mean z-score | -2.34 |
Structure conservation index | 0.90 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8053841 98 + 27905053 UGGAUGGCUCUGCUUCUGGGCCAUGUUCGCCAGUUGGUCAGUUAGCCAGUUCGCCAGCCAACUUCUGUAGAAUUGUGCGUGUGGCCCAGAAGAACAGG .........((((((((((((((..(..(((....)))......((((((((..(((.......)))..)))))).)))..)))))))))))..))). ( -37.90) >DroEre_CAF1 125252 82 + 1 UGGAGAGCCCUGCUUCUGGGCCAUGUUCGCCAG----------------UUGGCCAGCCAACUUCUGUAGAAUUGUGCGUGUGGCCCAGAAGAACUGG ........((..((((((((((((...((((((----------------((((....)))))(((....))).)).))).))))))))))))....)) ( -35.70) >DroYak_CAF1 125149 90 + 1 UGGAUGGCCCCGCUUCUGGGCCGUGUUCGCCAGUUGA--------CCAGUUGGCCAGCCAACUUCUGUAGAAUUGUGCGUGUGGCCCAGAAGAACUGG .((......)).(((((((((((....((((((((.(--------(.((((((....))))))...))..))))).)))..)))))))))))...... ( -37.90) >consensus UGGAUGGCCCUGCUUCUGGGCCAUGUUCGCCAGUUG_________CCAGUUGGCCAGCCAACUUCUGUAGAAUUGUGCGUGUGGCCCAGAAGAACUGG .......((...(((((((((((..(..((((((((((......))))))))))..(((((.(((....)))))).)))..)))))))))))....)) (-33.44 = -34.17 + 0.73)
Location | 8,053,841 – 8,053,939 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -29.33 |
Energy contribution | -29.37 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.10 |
Mean z-score | -3.29 |
Structure conservation index | 0.82 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8053841 98 - 27905053 CCUGUUCUUCUGGGCCACACGCACAAUUCUACAGAAGUUGGCUGGCGAACUGGCUAACUGACCAACUGGCGAACAUGGCCCAGAAGCAGAGCCAUCCA .(((..(((((((((((..(((.((..((....))(((((((..(....)..))))))).......)))))....))))))))))))))......... ( -38.20) >DroEre_CAF1 125252 82 - 1 CCAGUUCUUCUGGGCCACACGCACAAUUCUACAGAAGUUGGCUGGCCAA----------------CUGGCGAACAUGGCCCAGAAGCAGGGCUCUCCA ((....(((((((((((..(((.((.(((....)))(((((....))))----------------))))))....)))))))))))...))....... ( -33.30) >DroYak_CAF1 125149 90 - 1 CCAGUUCUUCUGGGCCACACGCACAAUUCUACAGAAGUUGGCUGGCCAACUGG--------UCAACUGGCGAACACGGCCCAGAAGCGGGGCCAUCCA ((....((((((((((...(((.((.(((....)))((((((..(....)..)--------)))))))))).....))))))))))..))........ ( -35.80) >consensus CCAGUUCUUCUGGGCCACACGCACAAUUCUACAGAAGUUGGCUGGCCAACUGG_________CAACUGGCGAACAUGGCCCAGAAGCAGGGCCAUCCA ...(((((((((((((.((.((.((((((....).)))))))))((((..(((........)))..))))......))))))))...)))))...... (-29.33 = -29.37 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:02 2006