Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,043,572 – 8,043,692 |
Length | 120 |
Max. P | 0.521330 |
Location | 8,043,572 – 8,043,692 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -37.42 |
Consensus MFE | -23.61 |
Energy contribution | -24.87 |
Covariance contribution | 1.26 |
Combinations/Pair | 1.46 |
Mean z-score | -1.32 |
Structure conservation index | 0.63 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8043572 120 + 27905053 UAUUCCUCAAAGCCAGGAGCAGAGCAGGGCGUUCCCUUAGCUCUAAACCUUUCAAAUUGGAUAAAUACUCUGUCAGCUGUUCCUCGGCCGUUUCGCGCAGAAACUCGAUAAGUGAAACCU ...........((((((((((((((((((....))))..)))))...............((((.......))))....)))))).))).(((((((...(.....).....))))))).. ( -32.70) >DroVir_CAF1 229706 120 + 1 UAUUGCGCAGCGCUUGCAGCAGAGCAUGACGCUCCUGCAGACGCAGCGCCUUCAGCUGGCGCAAAUAUUCCGUCAUCUGUUGCUGUGCCGUUUCGCGUAGGAAUUUGAUCAGCGCCAAUU ....((((.((((..((((((((...(((((....(((....)))(((((.......)))))........))))))))))))).)))).(((((.....))))).......))))..... ( -44.50) >DroSec_CAF1 109526 120 + 1 UAUUCCGCAAAGCCAGGAGCAGAGCAGGGCGUUCCCUUAGCUCUAGACCUUUCAAAUUGGUUAAAUACUCUGUCAGCUGCUCCUCGGCCGUUUCGCGCAGAAACUCGAUUAGUGAAACCU .....(((...((((((((((((((((((....))))..))))).((((.........))))................)))))).))).(((((.....))))).......)))...... ( -37.20) >DroEre_CAF1 114145 120 + 1 UAUUUCGCAAAGCUAGGAGCAAAGCAGGCCGUUCCCUUAGCUGUAGUCCUUUUAAGUUGGUCAAAUACUCUGUCAACUGCUCCUCGGCCGUUUUGCGCAGGAACUCGAUGAGUGAAACCU .....(((((((((((((((..((((((......)))..)))............((((((.((.......)))))))))))))).)))...)))))).(((.((((...))))....))) ( -31.00) >DroYak_CAF1 114505 120 + 1 UAUUUCGCAACGCCAGGAGCAGAGCAGGGCGUUCCCUUAGCUGUAGACCUUUCAAGUUGGUCAAAUACUCUGUCAACUGCUCCUCGGCCGUUUCGCGCAGAAACUCGAUAAGUGAAACCU ..((((((...((((((((((((((((((....))))..)))...((((.........))))..............)))))))).))).(((((.....))))).......))))))... ( -42.60) >DroAna_CAF1 117116 120 + 1 UGUUGCGCAAAGCGAGUAGAAGGGCAGGACGCUCCCGCAACUGCAGGCUUUUCAGAUUGCUUAAAUACUCAGUGAUCUGCUCCCGGGCCGUUUCGCGCAGAAACUUGAUCAGAGCCAGCU .((((.((.((((((...(((((((.((......))((....))..)))))))...))))))..........(((((.(((....))).(((((.....)))))..)))))..)))))). ( -36.50) >consensus UAUUCCGCAAAGCCAGGAGCAGAGCAGGGCGUUCCCUUAGCUGUAGACCUUUCAAAUUGGUCAAAUACUCUGUCAACUGCUCCUCGGCCGUUUCGCGCAGAAACUCGAUAAGUGAAACCU ..((((((...(((((((((((.((((((.(((.....)))....((((.........)))).....))))))...)))))))).))).(((((.....))))).......))))))... (-23.61 = -24.87 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:56 2006