| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,042,694 – 8,042,794 |
| Length | 100 |
| Max. P | 0.746276 |
| Location | 8,042,694 – 8,042,794 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 79.80 |
| Mean single sequence MFE | -41.08 |
| Consensus MFE | -21.61 |
| Energy contribution | -23.20 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8042694 100 + 27905053 ACAGCGACGUGGAUCCGGAAGAACUGAGACACAGCACAUUGGGAUCUGCUUCAUGGGCCAAAGAACUGGCAGCAGCUGCACCCUGACUGGGAGCAGCUGC .((..((.(..(((((.((.(..(((.....)))..).)).)))))..).)).)).((((......)))).((((((((.(((.....))).)))))))) ( -44.10) >DroPse_CAF1 127099 100 + 1 AAAGAGAUGUGGAGCCCGAAGUGCUUAGGCACAGCACAUUGGGAUCCGCCUCGUGGGCCAAGGCGCUCGAUGCAGUUGUGCCCUGGCCAGGAGCUGGCGU ...(((..(((((.(((((.(((((.......))))).))))).))))))))((.(((((.(((((.(......)..))))).)))))....))...... ( -43.70) >DroSec_CAF1 108648 100 + 1 ACAGCGACGUGGAUCCGGAGGAGCUGAGACACAGCACAUUGGGAUCUGCUUCAUGGGCCAAAGAAGUGGCAGCAGCUGCGCCCUGACUGGGAACAGCUGC .((..((.(..(((((.((.(.((((.....)))).).)).)))))..).)).)).((((......)))).(((((((..(((.....)))..))))))) ( -45.20) >DroEre_CAF1 113267 100 + 1 ACAGCGACGUAGAUCCGGAGGAGCUCAGACACAGCACAUUGGGAUCUGACUCAUGGGCCAAAGAACUGACAGCUGUGGCGGCCUGACUGGGAGCAGCUGA .((((..(.(((((((.((.(.(((.......))).).)).))))))).((((((((((...(......).((....))))))))..)))).)..)))). ( -32.00) >DroYak_CAF1 113630 100 + 1 ACAGCGACGUAGAUCCGGAGGAGCUCAAACAUAGCACAUUGGGAUCUGACUCAUGGGCCAAAGAACUGGCAGCUGUUGCGGCCUGACUGGGAGCAGCUGG ..(((((..(((((((.((.(.(((.......))).).)).)))))))..))....((((......)))).)))(((((..(((....))).)))))... ( -33.70) >DroPer_CAF1 125372 100 + 1 AAAGAGAUGUGGAGCCCGAAGUGCUUAGGCACAGCACAUUGGGAUCCGCCUCGUGGGCCAAGGCGCUCGAUGCAGUUGUGCCUUGGCCAGGAGCUGGCGU ...(((..(((((.(((((.(((((.......))))).))))).))))))))((.(((((((((((.(......)..)))))))))))....))...... ( -47.80) >consensus ACAGCGACGUGGAUCCGGAAGAGCUCAGACACAGCACAUUGGGAUCUGCCUCAUGGGCCAAAGAACUGGCAGCAGUUGCGCCCUGACUGGGAGCAGCUGC .....((.((((((((.((.(.(((.......))).).)).)))))))).))................(((((((((....(((....)))))))))))) (-21.61 = -23.20 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:55 2006