Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,037,350 – 8,037,473 |
Length | 123 |
Max. P | 0.866039 |
Location | 8,037,350 – 8,037,446 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.57 |
Mean single sequence MFE | -34.56 |
Consensus MFE | -21.54 |
Energy contribution | -20.32 |
Covariance contribution | -1.22 |
Combinations/Pair | 1.22 |
Mean z-score | -2.30 |
Structure conservation index | 0.62 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8037350 96 + 27905053 AGUAUGUUUACGAUAGUGUUG----------------------UGCCUG-GAACUAAGUCCACGACGCUCGCAGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGAUUUUGAUAAGGUUCC- .(((....)))......((((----------------------.(((((-.(((((((((((((..(....)..))))))))))))).))..))).))))(((((((.....)))))))- ( -29.80) >DroSec_CAF1 103393 115 + 1 AGUAUGUUUACGAUAGUGUUGUUUUGGGCAGUUAAGAUCGAAGUGCCUGGGAACUAAGUCCA---CGCUCGCGGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGAUUUCGAUAAGGUG-U- ....((((((.((((....)))).))))))......(((((((((((..(.(((((((((((---(((.....)))))))))))))).)...)))........))))))))......-.- ( -37.10) >DroSim_CAF1 109658 116 + 1 ACUAUGUUUACGAUAGUGUUGUUUUGGGCAGUUAAGAUCGAAGUGCCUGGGAACUAAGUCCA---CGCUCGCGGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGAUUUCGAUAAGGUUCC- (((((.......)))))((..(((..((((.((.......)).))))..).(((((((((((---(((.....))))))))))))))..))..)).....(((((((.....)))))))- ( -37.80) >DroEre_CAF1 106467 117 + 1 AGUAUGCUUACGAUAAUGUUGUUUUGGGUAGUUAAAAUCGAAGUGCCUGGGAACUAAGUCCA---UACUUGCUGUGUGAGCUUAGUUGUAAUGGCCUAAUGGGGUUUUGAUAAGGUUCCU ....((((((.((((....)))).))))))(((((((((..((.(((..(.(((((((..((---(((.....)))))..))))))).)...))))).....)))))))))......... ( -31.90) >DroYak_CAF1 108595 116 + 1 AGUAGGCUUACGAUAAUGUUGUUUUGGGUAGUUAAAAGCGAAGUGCCCGGGAACUAAGUCUA---UACUUGCUGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGGUUUUGAUAAGGUUCC- ..(((((((((((........(((((((((.((.......)).))))))))).(((((((((---(((.....)))))))))))))))))..))))))..((..(((.....)))..))- ( -36.20) >consensus AGUAUGUUUACGAUAGUGUUGUUUUGGGCAGUUAAAAUCGAAGUGCCUGGGAACUAAGUCCA___CGCUCGCGGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGAUUUUGAUAAGGUUCC_ ......(((((((.(((.((.(((((..(......)..))))).(((..(.(((((((((((...(((.....)))))))))))))).)...))).....)).)))))).))))...... (-21.54 = -20.32 + -1.22)
Location | 8,037,371 – 8,037,473 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.61 |
Mean single sequence MFE | -34.46 |
Consensus MFE | -23.88 |
Energy contribution | -23.52 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -1.68 |
Structure conservation index | 0.69 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8037371 102 + 27905053 ---UGCCUG-GAACUAAGUCCACGACGCUCGCAGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGAUUUUGAUAAGGUUCC---------UCUGGUGGUUUAUGUACCCGACAUCAC----- ---.(((((-.(((((((((((((..(....)..))))))))))))).))..))).....(((((((.....)))))))---------((.((((.......)))).))......----- ( -31.70) >DroSec_CAF1 103433 102 + 1 AAGUGCCUGGGAACUAAGUCCA---CGCUCGCGGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGAUUUCGAUAAGGUG-U---------ACUGGUGGUUUAUGUACCCGACAUCAC----- ....(((..(.(((((((((((---(((.....)))))))))))))).)...)))..................((((-(---------.(.((((.......)))).))))))..----- ( -36.50) >DroSim_CAF1 109698 103 + 1 AAGUGCCUGGGAACUAAGUCCA---CGCUCGCGGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGAUUUCGAUAAGGUUCC---------UCUGGUGGUUUAUGUACCCGACAUCAC----- ..(((..(((((((((((((((---(((.....))))))))))))))..(((.(((....(((((((.....)))))))---------...))).)))......)))).)))...----- ( -36.00) >DroEre_CAF1 106507 112 + 1 AAGUGCCUGGGAACUAAGUCCA---UACUUGCUGUGUGAGCUUAGUUGUAAUGGCCUAAUGGGGUUUUGAUAAGGUUCCUCUGGUUCCUCUGGUGGUUUGUGUACCCGACAUCAC----- .((.(((..(.(((((((..((---(((.....)))))..))))))).)...)))))....((((....(((((...((.(..(.....)..).)))))))..))))........----- ( -33.30) >DroYak_CAF1 108635 108 + 1 AAGUGCCCGGGAACUAAGUCUA---UACUUGCUGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGGUUUUGAUAAGGUUCC---------UCUGGUGGUUUAUGUACCCGACAUCACUCACC .((((..(((((((((((((((---(((.....))))))))))))))..(((.(((....((..(((.....)))..))---------...))).)))......))))....)))).... ( -34.80) >consensus AAGUGCCUGGGAACUAAGUCCA___CGCUCGCGGUGUGGGCUUAGUUGUAAUGGCUUAAUGGGAUUUUGAUAAGGUUCC_________UCUGGUGGUUUAUGUACCCGACAUCAC_____ ....(((..(.(((((((((((...(((.....)))))))))))))).)...)))....((((......(((((.(.((............)).).)))))...))))............ (-23.88 = -23.52 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:54 2006