Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,146,997 – 1,147,097 |
Length | 100 |
Max. P | 0.725467 |
Location | 1,146,997 – 1,147,097 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 71.81 |
Mean single sequence MFE | -14.72 |
Consensus MFE | -1.66 |
Energy contribution | -1.70 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.45 |
Mean z-score | -1.68 |
Structure conservation index | 0.11 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1146997 100 + 27905053 UUUUAAUUUUCCCACUUCCAUUUCUCCCCAUCGCUUCCUGACACUUUCAAUUGAUUUGCAUAGUCAGUCAGUCGCACUUUUAGGUGGGCCACCCCACCUU ................................((...((((((((..(((.....)))...)))..)))))..))......(((((((....))))))). ( -20.30) >DroSec_CAF1 82508 96 + 1 UUUUAAUUUUCCCACACCCAUUUCUCCCCACCGCUUCCUGACACUUUCAAUUGAUUUGCAUAGUC----AGUCGCACUUUUGCGUGGGCCACCCCACCAU ..........(((((......................(((((.....(((.....)))....)))----))..(((....))))))))............ ( -16.20) >DroSim_CAF1 78380 89 + 1 UU-UAAUUUUCCCACAC-CAUUUCUCCCCACCGCUUCCUGACACU-UCAAUUGAU-UGCAUAGUC----AGUCGCACUUUUGCGUGGGCCACCC-A-CA- ..-.......(((((..-...................(((((...-.(((....)-))....)))----))..(((....))))))))......-.-..- ( -16.00) >DroYak_CAF1 103760 95 + 1 UU-GAAUUUUCCAAUUCUAUUUUCUCUUCAACGCUUCCUGACAGUUUUAAUUGAUUUGCAUAGUC----AAUCGCACUUUUACAAGAGCCACCCCGCCUU ..-(((((....)))))...............((((..(((.(((....(((((((.....))))----)))...))).)))...))))........... ( -9.70) >DroAna_CAF1 77216 87 + 1 UU--A-UAUUUCUUCUUAUAUUUCUUACAACUGUUUCCUGACAAGUUUAAUU-----GCCGAGUG----GAUUGUGGGCUUACGUGAACCACGCC-CUGU ..--.-......................(((((((....))).)))).....-----.....(((----(.(..((......))..).))))...-.... ( -11.40) >consensus UU_UAAUUUUCCCACUCCCAUUUCUCCCCACCGCUUCCUGACACUUUCAAUUGAUUUGCAUAGUC____AGUCGCACUUUUACGUGGGCCACCCCACCAU ..........(((((.......................(((.....))).......(((..............))).......)))))............ ( -1.66 = -1.70 + 0.04)
Location | 1,146,997 – 1,147,097 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 71.81 |
Mean single sequence MFE | -20.68 |
Consensus MFE | -4.83 |
Energy contribution | -4.95 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.33 |
Mean z-score | -1.74 |
Structure conservation index | 0.23 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1146997 100 - 27905053 AAGGUGGGGUGGCCCACCUAAAAGUGCGACUGACUGACUAUGCAAAUCAAUUGAAAGUGUCAGGAAGCGAUGGGGAGAAAUGGAAGUGGGAAAAUUAAAA .(((((((....))))))).......((.((..(((((....(((.....))).....)))))..))))............................... ( -24.30) >DroSec_CAF1 82508 96 - 1 AUGGUGGGGUGGCCCACGCAAAAGUGCGACU----GACUAUGCAAAUCAAUUGAAAGUGUCAGGAAGCGGUGGGGAGAAAUGGGUGUGGGAAAAUUAAAA .......(((..(((((((...(.(((..((----(((....(((.....))).....)))))...))).)....(....)..)))))))...))).... ( -22.70) >DroSim_CAF1 78380 89 - 1 -UG-U-GGGUGGCCCACGCAAAAGUGCGACU----GACUAUGCA-AUCAAUUGA-AGUGUCAGGAAGCGGUGGGGAGAAAUG-GUGUGGGAAAAUUA-AA -..-.-.(((..(((((((...(.(((..((----(((....((-(....))).-...)))))...))).)....(....).-)))))))...))).-.. ( -23.30) >DroYak_CAF1 103760 95 - 1 AAGGCGGGGUGGCUCUUGUAAAAGUGCGAUU----GACUAUGCAAAUCAAUUAAAACUGUCAGGAAGCGUUGAAGAGAAAAUAGAAUUGGAAAAUUC-AA ..(((((....((.(((....))).))((((----((.........))))))....)))))......................(((((....)))))-.. ( -17.30) >DroAna_CAF1 77216 87 - 1 ACAG-GGCGUGGUUCACGUAAGCCCACAAUC----CACUCGGC-----AAUUAAACUUGUCAGGAAACAGUUGUAAGAAAUAUAAGAAGAAAUA-U--AA ...(-(((.((.....))...))))(((((.----.....(((-----((......))))).(....).)))))....................-.--.. ( -15.80) >consensus AAGGUGGGGUGGCCCACGUAAAAGUGCGACU____GACUAUGCAAAUCAAUUGAAAGUGUCAGGAAGCGGUGGGGAGAAAUGGGAGUGGGAAAAUUA_AA ............(((((..................(((....................))).(....).................))))).......... ( -4.83 = -4.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:50 2006