Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 263,332 – 263,422 |
Length | 90 |
Max. P | 0.668392 |
Location | 263,332 – 263,422 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -35.28 |
Energy contribution | -35.40 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.04 |
Mean z-score | -1.48 |
Structure conservation index | 0.90 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 263332 90 + 27905053 AGGCCCCAUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGGGGGCAGCACUGAGUCUGCACCCUUUCGCGUCCUGCCCCACA ..........(((((((...((..((((((.....))))))...((((((((((((.....).)))).))))))))))))))))...... ( -39.60) >DroSec_CAF1 7509 90 + 1 AGGCCCCUUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGGGGGCGGCUCUGAGUCGGCACCCUUUCGCGUCCUGCCCCACA ..........(((((((...((((((((((.....))))))....((((((.((((.....)))).).))))))))))))))))...... ( -40.30) >DroSim_CAF1 7382 90 + 1 AGGCCCCAUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGGGGGCGGCUCUGAGUCGGCACCCUUUCGCGUCCUGCCCCACA ..........(((((((...((((((((((.....))))))....((((((.((((.....)))).).))))))))))))))))...... ( -40.30) >DroYak_CAF1 8251 89 + 1 -GACACCAUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGAGGGCGGGUCCGGUUCUGCACCCUUUCGCGUCCUGCCGCACA -.........(((((((....(((((((((.....)))))).)))(((((((((((......)))))..))))))..)))))))...... ( -36.70) >consensus AGGCCCCAUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGGGGGCGGCUCUGAGUCGGCACCCUUUCGCGUCCUGCCCCACA ..........(((((((...((..((((((.....))))))...((((((((((((.....))).)).))))))))))))))))...... (-35.28 = -35.40 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:50 2006