Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 63,593 – 63,692 |
Length | 99 |
Max. P | 0.995898 |
Location | 63,593 – 63,692 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 76.06 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -15.16 |
Energy contribution | -15.16 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.16 |
Mean z-score | -1.67 |
Structure conservation index | 0.63 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.766530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 63593 99 + 27905053 AAAUAAGCGUAAGUAAGGAGCAGAUCGCGCUGACAUCGAUGGGAUAGGUGCGGUGCUUAUGCAGUGGCACCCAGAAGGCUGGGAGAGAAGGGUACGAAG ......((((((((.........((((((((...(((.....))).)))))))))))))))).(((.(.(((((....))))).......).))).... ( -28.70) >DroSec_CAF1 4994 81 + 1 ACAUAAGCGUAAGUAAGCAAAUAAGUGUGCUGACAUCGCUGGAAU-------------AUGCAGUGGCGCCCAGAAGUC-----GUAAAGGGCACGAAG ......((((.((((.((......)).)))).))..(((((....-------------...)))))))((((.......-----.....))))...... ( -19.20) >DroSim_CAF1 8831 86 + 1 ACAUAAGCGUAAGUAAGCAAAUAAGUGUGCUGACAUCGCUGGGAU-------------AUGCAGUGGCGCCCAGAAGGCUGGGAGUAAAGGGCACGAAG ......((........))......((((.((.....(((((....-------------...)))))((.(((((....))))).))..)).)))).... ( -24.30) >consensus ACAUAAGCGUAAGUAAGCAAAUAAGUGUGCUGACAUCGCUGGGAU_____________AUGCAGUGGCGCCCAGAAGGCUGGGAGUAAAGGGCACGAAG ......((((.((((.((......)).)))).))..(((((.(.(((((.....)))))).)))))))((((.................))))...... (-15.16 = -15.16 + 0.01)
Location | 63,593 – 63,692 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 76.06 |
Mean single sequence MFE | -19.92 |
Consensus MFE | -14.63 |
Energy contribution | -14.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -2.18 |
Structure conservation index | 0.73 |
SVM decision value | 2.63 |
SVM RNA-class probability | 0.995898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 63593 99 - 27905053 CUUCGUACCCUUCUCUCCCAGCCUUCUGGGUGCCACUGCAUAAGCACCGCACCUAUCCCAUCGAUGUCAGCGCGAUCUGCUCCUUACUUACGCUUAUUU ....((((((.................))))))......((((((...((...((((.....))))...))((.....))...........)))))).. ( -17.33) >DroSec_CAF1 4994 81 - 1 CUUCGUGCCCUUUAC-----GACUUCUGGGCGCCACUGCAU-------------AUUCCAGCGAUGUCAGCACACUUAUUUGCUUACUUACGCUUAUGU ....((((((.....-----.......))))))....((((-------------(....((((..((.((((........)))).))...))))))))) ( -21.40) >DroSim_CAF1 8831 86 - 1 CUUCGUGCCCUUUACUCCCAGCCUUCUGGGCGCCACUGCAU-------------AUCCCAGCGAUGUCAGCACACUUAUUUGCUUACUUACGCUUAUGU ....((((((.................))))))....((((-------------(....((((..((.((((........)))).))...))))))))) ( -21.03) >consensus CUUCGUGCCCUUUACUCCCAGCCUUCUGGGCGCCACUGCAU_____________AUCCCAGCGAUGUCAGCACACUUAUUUGCUUACUUACGCUUAUGU ....((((((.................))))))..........................((((..((.((((........)))).))...))))..... (-14.63 = -14.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:49 2006