Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,025,443 – 8,025,541 |
Length | 98 |
Max. P | 0.562306 |
Location | 8,025,443 – 8,025,541 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.84 |
Mean single sequence MFE | -26.58 |
Consensus MFE | -14.10 |
Energy contribution | -14.97 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.10 |
Mean z-score | -2.12 |
Structure conservation index | 0.53 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8025443 98 + 27905053 GCCUUUAGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACGCUCUCUUUCUCUCCGCUCCGUCCCUCUGUUGG-UCCUGCUGCGGAGCUGUGGCU (((..(((((((((((.......((((((....)))))).......)))).........((..((..((......))-..).)..))))))))).))). ( -27.94) >DroSec_CAF1 91656 94 + 1 GCCUUUAGCUCCGGGAAAAAUAAAUACAUUUAAUUGUAUAAAACCCUCU----CCCUCCGCUGCAUCCCUCUGUUGG-UCCUGCCGGCGAGCUGUGGCU (((..((((((.((((.......(((((......))))).........)----)))...((((((..((......))-...)).)))))))))).))). ( -28.39) >DroSim_CAF1 92901 94 + 1 GCCUUUAGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACCCUCU----CCCUCCGCUGCAUCCCUCUGUUGG-UCCUGCCGGCGAGCUGUGGCU (((..((((((.((((.......((((((....)))))).........)----)))...((((((..((......))-...)).)))))))))).))). ( -28.49) >DroEre_CAF1 94523 94 + 1 GCCUUUGGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACGCUCUCC----CAGUCCCCAGUCCCCCUGUUGG-UCCUGCCGCCGAGCUGUGGCU (((..((((((.((((.......((((((....)))))).........)))----)......(((..((......))-..))).....)))))).))). ( -24.79) >DroYak_CAF1 96033 98 + 1 GCCUUUGGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACGCUCUUUCUGCCUCUCCUCUGGCCCUCUGUUGG-UCCUGCCGCCGAGCUGUGGCU (((((((((..(((((..((((.((((((....))))))..............(((........)))....))))..-)))))..))))))....))). ( -27.30) >DroAna_CAF1 99931 96 + 1 UCCUUUGGCUCCGGGAAAAAUAAAUACAUUUAACUGUAUAAAACCCUUCAC--UCCUCGGGCGUAUUUUUCCUUUCUUUCCAGCUG-CGAGAGAAAGCU ......((((..((((((((((.(((((......)))))....(((.....--.....)))..))))))))))((((((((....)-.))))))))))) ( -22.60) >consensus GCCUUUAGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACCCUCU____CCCUCCGCUCCAUCCCUCUGUUGG_UCCUGCCGCCGAGCUGUGGCU (((..(((((((((((.......(((((......)))))............................((......)).))))).....)))))).))). (-14.10 = -14.97 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:43 2006