Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,023,221 – 8,023,312 |
Length | 91 |
Max. P | 0.581012 |
Location | 8,023,221 – 8,023,312 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -18.73 |
Consensus MFE | -12.42 |
Energy contribution | -12.42 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.66 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.581012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8023221 91 + 27905053 UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGUGCAAAGCACUGC-AAUGCCAUUGUUU-UUCAUUCCCC-AC---C-CCCAGGA-UGCUCC .((((((((((((........)))))))..((((....((((...))))...-..)))).......-..........-..---.-.....))-)))... ( -17.10) >DroPse_CAF1 107600 95 + 1 UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGGGCAAAGCACUGCAAAUGCCAUUGUUUUUUCAUUCCUCCGC---CAAACAGGC-CUCCCC (((.(.(((((((........))))))).).)))....(((.((((((..((....))...))))))...........((---(.....)))-..))). ( -19.10) >DroEre_CAF1 92295 92 + 1 UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAAGUUGUGCAAAGCACUGCGAAUGCCAUUGUUU-UUCAUUCCCC-AC---CCUCCA-AA-UGCUCC .((((((((((((........)))))))..((((.((.((((...)))).))...)))).......-..........-..---......-))-)))... ( -18.60) >DroMoj_CAF1 157117 83 + 1 --UGUUGCAUAAAAAUUAAUAUUUAUGCGAGGCAACUUGUGCAAAGCACUGCAAAUGCCAUUGUUU-C-CAACC----GG-------CA-AACAGCCCC --..(((((((((........)))))))))((((.....((((......))))..)))).((((((-(-(....----))-------.)-))))).... ( -21.80) >DroAna_CAF1 97643 92 + 1 UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGUGCAAAACACUGCGAAUGCCAUUGUUU-UCCAACCCUC-ACAACCGCCCAC---UU--UU ((((..(((((((........)))))))..((((.....((((......))))..)))).......-.........)-))).........---..--.. ( -16.70) >DroPer_CAF1 105826 95 + 1 UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGGGCAAAGCACUGCAAAUGCCAUUGUUUUUUCAUUCCUCCGC---CAAACAGGC-CUCCCC (((.(.(((((((........))))))).).)))....(((.((((((..((....))...))))))...........((---(.....)))-..))). ( -19.10) >consensus UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGUGCAAAGCACUGCAAAUGCCAUUGUUU_UUCAUUCCUC_AC___C_ACCAGGA_UGCCCC ......(((((((........)))))))..((((......(((......)))...))))........................................ (-12.42 = -12.42 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:42 2006