Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,015,430 – 8,015,522 |
Length | 92 |
Max. P | 0.836102 |
Location | 8,015,430 – 8,015,522 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 86.88 |
Mean single sequence MFE | -15.90 |
Consensus MFE | -13.48 |
Energy contribution | -14.23 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.85 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.836102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8015430 92 + 27905053 UUUAGAACAAGGGUUAUAUUAUAGCCGAAGUCCCUUCUUCAAUCCCUACAGAAUGUCUUUCUGAACACAAAAACUGUA--AGUAUAUCCCUUCU ........(((((.((((((((((..((((......))))........(((((.....)))))..........)))).--)))))).))))).. ( -20.60) >DroSec_CAF1 81677 85 + 1 UUUAGAACAAGGGUUAUAUUAUAGCCGAA---------UCAAUCCCAACAGAAUGUCCUUCUGAACACAAUAUAUGUAAAAGUAUAUCCCUCCU .........((((.((((((.........---------..........(((((.....)))))...(((.....)))...)))))).))))... ( -12.50) >DroSim_CAF1 81992 94 + 1 UUUAGAACAAGGGUUAUAUUAUAGCCGAAAUCCCUUCUUCAAUCCCUACAGAAUGUCUUUCUGAACAUAAUAAAUGUAAAAGUAUAUCCCUCCU .........((((.((((((............................(((((.....))))).((((.....))))...)))))).))))... ( -14.60) >consensus UUUAGAACAAGGGUUAUAUUAUAGCCGAA_UCCCUUCUUCAAUCCCUACAGAAUGUCUUUCUGAACACAAUAAAUGUAAAAGUAUAUCCCUCCU .........((((.((((((......((((......))))........(((((.....))))).................)))))).))))... (-13.48 = -14.23 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:35 2006