Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,014,644 – 8,014,735 |
Length | 91 |
Max. P | 0.506318 |
Location | 8,014,644 – 8,014,735 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 83.42 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -18.39 |
Energy contribution | -18.60 |
Covariance contribution | 0.21 |
Combinations/Pair | 1.22 |
Mean z-score | -1.64 |
Structure conservation index | 0.70 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506318 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8014644 91 - 27905053 GAGUCGUCCGGCUCUCGG--ACACCAGCACACAUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUCUGCUCGUUGU ((((((((((.....)))--))((.(((.(((.....)))((((((.((((.....))))..))))))....))).))))))).......... ( -28.90) >DroSec_CAF1 80891 91 - 1 GAGUCGUCCGACUCUCGG--ACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUUCGCUCGUUGU ((((.(((((.....)))--))((.(((.(((.....)))((((((.((((.....))))..))))))....))).))......))))..... ( -29.40) >DroSim_CAF1 81207 91 - 1 GAGUCGUCCGGCUCUCGG--ACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUUUGCUCGUUGU ((((.(((((.....)))--))((.(((.(((.....)))((((((.((((.....))))..))))))....))).))......))))..... ( -28.40) >DroEre_CAF1 83690 91 - 1 GAGUCGUCCUGUUCUCGG--ACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUCUGCUCUUCGU (((((((((.......))--))((.(((.(((.....)))((((((.((((.....))))..))))))....))).))))))).......... ( -27.10) >DroYak_CAF1 85129 93 - 1 GAGUCGUCCUCUUCUCGGGAACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUCUGCUCUUCGU ((((..((((......)))).(((.(((.(((.....)))((((((.((((.....))))..))))))....))).))).....))))..... ( -26.20) >DroAna_CAF1 88976 71 - 1 GAA---------UUGCAA--ACUUUAGCAGAUGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCGAUUGCUUCAGCUU-UGACUC---------- ...---------((((..--......))))..((((((((((((((.((((.....))))..)))))))...)).)-))))..---------- ( -18.00) >consensus GAGUCGUCCGGCUCUCGG__ACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUCUGCUCGUUGU ((((......)))).......(((.(((.(((.....)))((((((.((((.....))))..))))))....))).))).............. (-18.39 = -18.60 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:34 2006