Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,004,860 – 8,004,989 |
Length | 129 |
Max. P | 0.688398 |
Location | 8,004,860 – 8,004,971 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -36.52 |
Consensus MFE | -25.36 |
Energy contribution | -26.33 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.07 |
Mean z-score | -1.65 |
Structure conservation index | 0.69 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8004860 111 - 27905053 UUAUGACAGACUCAAAGUAGCAUUGUGCGUGCGGUGAUGUGAGACCGCGGCUGACUGCAUUACUCAUACGCACCGUUGCACAAUUAACUUGGUUAGCCC--G-UAAUGCCGUC--U .......((((...((((...((((((((.((((((.((((((...((((....))))....))))))..))))))))))))))..))))(((......--.-....))))))--) ( -35.80) >DroPse_CAF1 88700 109 - 1 AGAGG----ACUG---CAGCCAUUGUGCGUGCGGUGGUUUCUGACCACAGCUCACUGCAUUACUCAUACGCACCGUUGCACAAUUAACUCACUUAGGCCCCGAAAACGCCACCGAU .(((.----..((---((((....(((((((.(((((((...)))))).((.....))......).))))))).)))))).......))).....(((.........)))...... ( -30.10) >DroSim_CAF1 71343 111 - 1 UUAUGGCAGACUCAGAGUGGCAUUGUGCGUGCGGUGAUGUGAGACCGCGGCUGACUGCAUUACUCAUACGCACCGUUGCACAAUUAACUUGGUUAGCUC--G-UAAUGCCAUC--U ..((((((......((((...((((((((.((((((.((((((...((((....))))....))))))..))))))))))))))((((...))))))))--.-...)))))).--. ( -40.50) >DroEre_CAF1 73874 111 - 1 UUAUGGCAGACUCUGAGUGGCAUUGUGCGUGCGGUGAUGUGUGACCGCGGCUGACUGCAUUACUCAUACGCACCGUUGCACAAUUAACUUGGUUAGCCC--A-UAAUGCCGAC--U (((((((.((((..((((...((((((((.((((((.(((((((..((((....)))).....)))))))))))))))))))))..)))))))).).))--)-))).......--. ( -41.70) >DroYak_CAF1 75179 111 - 1 UUAUGGCAGACUCGGAGUGGCAUUGUGCGUGCGGUGAUGUGUGACCGCGGCUGACUGCAUUACUCAUACGCACCGUUGCACAAUUAACGUAGUUUGCCC--G-UAAUGCCGUC--U ((((((((((((((...((..((((((((.((((((.(((((((..((((....)))).....))))))))))))))))))))))).)).)))))).))--)-))).......--. ( -42.90) >DroPer_CAF1 86942 109 - 1 AGAGG----ACUG---CAGCCAUUGUGCGUGCGGUGGUUUCUGACCACAGCUGACUGCAUUACUCAUACGCACCGUUGCACAAUUAACUCACUUAGGACCCGAAAACGCCACCGUU .(((.----..((---((((....(((((((.(((((((...)))))).((.....))......).))))))).)))))).......))).....((...((....))...))... ( -28.10) >consensus UUAUGGCAGACUC_GAGUGGCAUUGUGCGUGCGGUGAUGUGUGACCGCGGCUGACUGCAUUACUCAUACGCACCGUUGCACAAUUAACUUAGUUAGCCC__G_UAAUGCCAUC__U ..................(((((((((((.((((((.(((((((.....((.....)).....)))))))))))))))))))))(((.....)))))).................. (-25.36 = -26.33 + 0.97)
Location | 8,004,895 – 8,004,989 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 68.91 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -16.02 |
Energy contribution | -16.13 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.15 |
Structure conservation index | 0.60 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8004895 94 + 27905053 ACGGUGCGUAUGAGUAAUGCAGUCAGCCGCGGUCUCACAUCACCGCACGCACAAUGCUACUUUGAGUCUGUCAUAACGCC---------------CGCCUGCUCCUCCA .(((.(((((((......((((.(....(((((........)))))..((.....))........).))))))).)))))---------------))............ ( -23.50) >DroPse_CAF1 88740 82 + 1 ACGGUGCGUAUGAGUAAUGCAGUGAGCUGUGGUCAGAAACCACCGCACGCACAAUGGCUG---CAGU----CCUCU-------------------CGCUCGGCACUCC- .(((.(((...(((...((((((.(((((((((........)))))).))....).))))---))..----.))).-------------------)))))).......- ( -27.60) >DroSec_CAF1 71189 94 + 1 ACGGUGCGUAUGAGUAAUGCAGUCAGCCGCGGUCUCACAUCACCGCACGCACAAUGCCACUCUGAGUCUGCCAUAACGUU---------------CGCUUGCUCCUCCU ..((.(((..(((((.((((((((((..(((((........)))))..((.....))....))))..))).))).))..)---------------))..))).)).... ( -24.20) >DroYak_CAF1 75214 109 + 1 ACGGUGCGUAUGAGUAAUGCAGUCAGCCGCGGUCACACAUCACCGCACGCACAAUGCCACUCCGAGUCUGCCAUAACUCCAACAUUCCGCCCCUAUGCCUCCUCUUACU ..((.(((((.((((...(((....((.(((((........)))))..))....))).)))).((((........))))..............)))))..))....... ( -23.80) >DroAna_CAF1 79124 78 + 1 ACGGGGCGUAUGAGCAAUGCAGUCAGCUGCGGUCACACGUCACCGCACGCAGUGUGCCACGCCUUUU--------A-----------------------CGCUCCUCCA ..((((((((.((((...((((....))))((.(((((((........)).)))))))..).))).)--------)-----------------------)))))).... ( -31.40) >DroPer_CAF1 86982 82 + 1 ACGGUGCGUAUGAGUAAUGCAGUCAGCUGUGGUCAGAAACCACCGCACGCACAAUGGCUG---CAGU----CCUCU-------------------CGCUCGGCACUCC- .(((.(((...(((...((((((((((((((((........)))))).))....))))))---))..----.))).-------------------)))))).......- ( -30.80) >consensus ACGGUGCGUAUGAGUAAUGCAGUCAGCCGCGGUCACACAUCACCGCACGCACAAUGCCACUC_GAGU____CAUAA___________________CGCUCGCUCCUCC_ ...((((((.........((.....)).(((((........)))))))))))......................................................... (-16.02 = -16.13 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:32 2006