Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,000,357 – 8,000,471 |
Length | 114 |
Max. P | 0.608532 |
Location | 8,000,357 – 8,000,471 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 80.92 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -16.08 |
Energy contribution | -16.97 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.08 |
Mean z-score | -1.88 |
Structure conservation index | 0.59 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8000357 114 - 27905053 UUGUCUUAC-CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCCAC-UGGUACUCGUACUCUCACUCGUACUGGUACUG- .........-.(((.((((((((.((((((((((((((.......)))))..)))))))))..))))))))...)))......-.((((((.((((........)))).)))))).- ( -31.00) >DroPse_CAF1 79882 104 - 1 UUGUCUUACCCGAAGCAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCUAC-UGGUACUCCUCC------------UGUUCCGGG ........((((.((((((((...((((((((((((((.......)))))..)))))))))(((.((....)).)))))))..-.((....))...------------)))).)))) ( -27.00) >DroSec_CAF1 66742 104 - 1 UUGUCUUAC-CGACCGAAGCAAAACUUUUGCAUUUUCCCAUUUUCGGAAAACGUGCAAAAGGACUUCUUUUCAUGUCGGCCACGUGGUACUCGCACG-----------UGGUACAG- ........(-((((.((((.....((((((((((((((.......)))))..))))))))).....))))....)))))(((((((.......))))-----------))).....- ( -33.20) >DroEre_CAF1 69420 102 - 1 UUGUCUUAC-CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCCGC-UGGUACUCGUAC------------UCGUACUG- .........-.(((.((((((((.((((((((((((((.......)))))..)))))))))..))))))))...)))......-.(((((......------------..))))).- ( -24.30) >DroWil_CAF1 98182 100 - 1 UUGCCUUGU-U--CUGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGGCUCC----UGCUCCUCG-AC--UCCA------UGGCUAUG- ..(((.((.-.--..((((((((.((((((((((((((.......)))))..)))))))))..))))))))...(((...----.))).....-..--..))------.)))....- ( -24.30) >DroAna_CAF1 74017 102 - 1 UUGUCUUUC-CGAACGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCUCC-UUGUGGUCCUGC------------UGUUCCUG- .........-.((((((((((((.((((((((((((((.......)))))..)))))))))..))))))))((.(.(..(...-..)..).).)).------------.))))...- ( -24.20) >consensus UUGUCUUAC_CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCCAC_UGGUACUCGUAC____________UGGUACUG_ ...........(((.((((((((.((((((((((((((.......)))))..)))))))))..))))))))...)))........................................ (-16.08 = -16.97 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:29 2006