Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,991,361 – 7,991,462 |
Length | 101 |
Max. P | 0.826834 |
Location | 7,991,361 – 7,991,462 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.89 |
Mean single sequence MFE | -25.12 |
Consensus MFE | -14.44 |
Energy contribution | -15.08 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.18 |
Mean z-score | -1.88 |
Structure conservation index | 0.57 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7991361 101 + 27905053 GUUUCAUGGCCAGCUUUUCAUGGUCAGAAGACAACUGAAAACAGAGGAAUGAAAACGAGAAAAACAUG--A-GACAUGGCAAGGC-------UGGAUCUGACCAUGAUUUA ...((((((((((((((((((((((....)))..(((....)))........................--.-..))))).)))))-------)))......)))))).... ( -26.40) >DroPse_CAF1 69735 87 + 1 UUUUC--------CAUUUCAUGGUCAGCAACCCACUGAAAAA---GAAAAAAAAGAGAGAAUAAGAAGCAAGCAUUUGGGAAGC-------------CUGACCUUGAAUUG .....--------((.((((.(((((((..((((((.....)---).....................(....)...))))..).-------------)))))).)))).)) ( -19.20) >DroSec_CAF1 57663 101 + 1 GUUUCAUGGCCAGCUUUUCAUGGUCAGCAGACAACUGAAAACAGAGGAAUUAAAACGAGAAAAAAUUG--A-GACGUGGCAAGGC-------UGGUUCUGACCAUGAUUUA ...((((((((((((((((((((((....)))..(((....)))........................--.-..))))).)))))-------)))......)))))).... ( -26.00) >DroSim_CAF1 57945 101 + 1 GUUUCAUGGCCAGCUUUUCAUGGUCAGCAGACAACUGAAAACAGAGGAAUGAAAACGAGAAAAACAUG--A-GACGUGGCAAGGC-------UGGUUCUGACCAUGAUUUA ...((((((((((((((((((((((....)))..(((....)))........................--.-..))))).)))))-------)))......)))))).... ( -26.00) >DroEre_CAF1 60144 101 + 1 GUUUCAUGGCCAGAUUUUCAUGGUCAGCAGACAACUGAAAACAGAGGAAUGAAAACGAGAAAAACAUG--A-GACGUGACAAGCC-------UUGUGCUGACCAUGAUUUA .................((((((((((((.(...(((....)))(((..((...(((...........--.-..)))..))..))-------)).)))))))))))).... ( -26.64) >DroYak_CAF1 60466 108 + 1 GUUUCAUGGCCAGAUUUUCAUGGUCAGCAGACAACUGAAAACAGAGGAAUGAAAACGAGAAAAACAUG--A-GACGUGACAAGCCGUUUGCCUGGUUCUGACCAUGAUUUA ...((((((.((((((((((..(((....)))...))))))...(((.....(((((.(.....((((--.-..)))).....)))))).)))...)))).)))))).... ( -26.50) >consensus GUUUCAUGGCCAGCUUUUCAUGGUCAGCAGACAACUGAAAACAGAGGAAUGAAAACGAGAAAAACAUG__A_GACGUGGCAAGCC_______UGGUUCUGACCAUGAUUUA .................((((((((((.......(((....)))....................((((......))))...................)))))))))).... (-14.44 = -15.08 + 0.64)
Location | 7,991,361 – 7,991,462 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.89 |
Mean single sequence MFE | -24.39 |
Consensus MFE | -14.76 |
Energy contribution | -16.23 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.14 |
Mean z-score | -2.31 |
Structure conservation index | 0.61 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7991361 101 - 27905053 UAAAUCAUGGUCAGAUCCA-------GCCUUGCCAUGUC-U--CAUGUUUUUCUCGUUUUCAUUCCUCUGUUUUCAGUUGUCUUCUGACCAUGAAAAGCUGGCCAUGAAAC ....((((((((((.....-------.......((((..-.--)))).......................((((((...(((....)))..)))))).))))))))))... ( -23.80) >DroPse_CAF1 69735 87 - 1 CAAUUCAAGGUCAG-------------GCUUCCCAAAUGCUUGCUUCUUAUUCUCUCUUUUUUUUC---UUUUUCAGUGGGUUGCUGACCAUGAAAUG--------GAAAA ((.((((.((((((-------------.(..((((...............................---........))))..))))))).)))).))--------..... ( -18.13) >DroSec_CAF1 57663 101 - 1 UAAAUCAUGGUCAGAACCA-------GCCUUGCCACGUC-U--CAAUUUUUUCUCGUUUUAAUUCCUCUGUUUUCAGUUGUCUGCUGACCAUGAAAAGCUGGCCAUGAAAC ....((((((((((...((-------(..(((..(((..-.--...........)))..))).....)))((((((...(((....)))..)))))).))))))))))... ( -22.64) >DroSim_CAF1 57945 101 - 1 UAAAUCAUGGUCAGAACCA-------GCCUUGCCACGUC-U--CAUGUUUUUCUCGUUUUCAUUCCUCUGUUUUCAGUUGUCUGCUGACCAUGAAAAGCUGGCCAUGAAAC ....(((((((((((....-------((...))....))-.--...(((((((..(((..((..(..(((....)))..)..))..)))...))))))))))))))))... ( -24.50) >DroEre_CAF1 60144 101 - 1 UAAAUCAUGGUCAGCACAA-------GGCUUGUCACGUC-U--CAUGUUUUUCUCGUUUUCAUUCCUCUGUUUUCAGUUGUCUGCUGACCAUGAAAAUCUGGCCAUGAAAC ....((((((((((....(-------((..((..(((..-.--...........)))...))..)))..(((((((...(((....)))..)))))))))))))))))... ( -26.74) >DroYak_CAF1 60466 108 - 1 UAAAUCAUGGUCAGAACCAGGCAAACGGCUUGUCACGUC-U--CAUGUUUUUCUCGUUUUCAUUCCUCUGUUUUCAGUUGUCUGCUGACCAUGAAAAUCUGGCCAUGAAAC ....(((((((((((..(((((.....))))).......-.--.....(((((..(((..((..(..(((....)))..)..))..)))...))))))))))))))))... ( -30.50) >consensus UAAAUCAUGGUCAGAACCA_______GCCUUGCCACGUC_U__CAUGUUUUUCUCGUUUUCAUUCCUCUGUUUUCAGUUGUCUGCUGACCAUGAAAAGCUGGCCAUGAAAC ....((((((((((....................(((.................))).............((((((...(((....)))..)))))).))))))))))... (-14.76 = -16.23 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:26 2006