Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,989,659 – 7,989,761 |
Length | 102 |
Max. P | 0.547138 |
Location | 7,989,659 – 7,989,761 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.57 |
Mean single sequence MFE | -35.08 |
Consensus MFE | -17.58 |
Energy contribution | -18.90 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.25 |
Mean z-score | -1.91 |
Structure conservation index | 0.50 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7989659 102 + 27905053 AUUAAAUCCGCAGCUGCCUCAGGUGGAGCAACGUCUGCAACUGCAACUUCUGUUGUAACUUCGACAGGCGGUGCAACUGGC------GUUUCAAUGGCAGCUUCUGAU .....(((.(.(((((((.....((((((..((..((((.((((.....((((((......))))))))))))))..))..------))))))..))))))).).))) ( -36.70) >DroSec_CAF1 55871 102 + 1 AUUAAAUCAGCAGCUGCCUCAGGUGGAGCAACGUCUGCAACUACAACUUCUGUUGUAACUUCGACAGGCGGUUGAACUAGC------GUUUCAACGGCAGCCUCUGUU .......(((..((((((.....((((((..(((((((...((((((....)))))).....).))))))((((...))))------))))))..))))))..))).. ( -32.90) >DroSim_CAF1 56119 102 + 1 AUUAAAUCAGCAGCUGCCUCAGGUGGAGCAACGUCUGCAACUGCAACUUCUGUUGUAACUUCGACAGGCGGUGCAACUGGC------GUUUCAACGGCAGCCUCUGUU .......(((..((((((.....((((((..((..((((.((((.....((((((......))))))))))))))..))..------))))))..))))))..))).. ( -35.90) >DroEre_CAF1 58334 93 + 1 AUUAAAG---CAGUUGCCUCAGAUGGAGCAGGGUCUGCAACUGCAGCUUCUGUUGUAACUUCG------------ACUGCCUGCGUGGUUUCUACGGCGGCCUCUAAU ......(---((((((....((.((.(((((((.((((....)))).))))))).)).)).))------------)))))....(.(((..(....)..))).).... ( -30.10) >DroYak_CAF1 58641 108 + 1 AUUAAUGCUGCAGCUGCCUCAGGAGCAGCAGGGUCUGCAACUGUAACUUCUGUUGUGACUUCGGCAGGCGUUGCAACUGGCUGCGUGGCUUCCACGACCGCUUCUGAU ......((....))....((((((((.((((.((((((....((.((.......)).))....)))))).))))....((...(((((...))))).)))))))))). ( -39.80) >consensus AUUAAAUCAGCAGCUGCCUCAGGUGGAGCAACGUCUGCAACUGCAACUUCUGUUGUAACUUCGACAGGCGGUGCAACUGGC______GUUUCAACGGCAGCCUCUGAU ............((((((.....((((((...((.(((....))))).(((((((......)))))))...................))))))..))))))....... (-17.58 = -18.90 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:24 2006